Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IFO entry

There are 7 chains in PDB entry 8IFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 125LEU 200
B
 PRO 124VAL 203
C
 G 1 C 17
D
 G 1 C 17
F
 PRO 124LEU 200
G
 G 1 C 17
H
 G 1 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8IFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 158Right-handed alpha
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
180 192Right-handed alpha
Helix 4
AA4
A
194 198Right-handed 310
Helix 5
AA5
B
145 158Right-handed alpha
Helix 6
AA6
B
176 179Right-handed 310
Helix 7
AA7
B
180 192Right-handed alpha
Helix 8
AA8
B
194 198Right-handed 310
Helix 9
AA9
F
145 158Right-handed alpha
Helix 10
AB1
F
176 179Right-handed 310
Helix 11
AB2
F
180 192Right-handed alpha
Helix 12
AB3
F
194 198Right-handed 310
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There are 3 sheets in PDB entry 8IFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
142 144anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
142 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
137 139first strand
Strand 2
F
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il