Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IFY entry

There are 3 chains in PDB entry 8IFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 30LEU 1145
B
TYR 30LEU 1145
C
TYR 30THR 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are149 helices in PDB entry 8IFY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
294 304Right-handed alpha
Helix 2
AA2
A
365 371Right-handed alpha
Helix 3
AA3
A
404 410Right-handed alpha
Helix 4
AA4
A
416 421Right-handed alpha
Helix 5
AA5
A
737 744Right-handed alpha
Helix 6
AA6
A
746 754Right-handed alpha
Helix 7
AA7
A
755 757Right-handed 310
Helix 8
AA8
A
758 783Right-handed alpha
Helix 9
AA9
A
816 826Right-handed alpha
Helix 10
AB1
A
849 853Right-handed alpha
Helix 11
AB2
A
854 856Right-handed 310
Helix 12
AB3
A
866 885Right-handed alpha
Helix 13
AB4
A
886 890Right-handed 310
Helix 14
AB5
A
897 908Right-handed alpha
Helix 15
AB6
A
912 918Right-handed alpha
Helix 16
AB7
A
919 941Right-handed alpha
Helix 17
AB8
A
942 944Right-handed 310
Helix 18
AB9
A
945 965Right-handed alpha
Helix 19
AC1
A
966 968Right-handed 310
Helix 20
AC2
A
976 984Right-handed alpha
Helix 21
AC3
A
985 1033Right-handed alpha
Helix 22
AC4
A
1116 1118Right-handed 310
Helix 23
AC5
A
1140 1145Right-handed alpha
Helix 24
AC6
B
294 304Right-handed alpha
Helix 25
AC7
B
338 343Right-handed alpha
Helix 26
AC8
B
383 390Right-handed 310
Helix 27
AC9
B
405 410Right-handed 310
Helix 28
AD1
B
416 422Right-handed alpha
Helix 29
AD2
B
438 443Right-handed alpha
Helix 30
AD3
B
616 620Right-handed 310
Helix 31
AD4
B
737 744Right-handed alpha
Helix 32
AD5
B
747 755Right-handed alpha
Helix 33
AD6
B
758 783Right-handed alpha
Helix 34
AD7
B
816 826Right-handed alpha
Helix 35
AD8
B
850 855Right-handed alpha
Helix 36
AD9
B
866 885Right-handed alpha
Helix 37
AE1
B
886 890Right-handed 310
Helix 38
AE2
B
897 909Right-handed alpha
Helix 39
AE3
B
913 919Right-handed alpha
Helix 40
AE4
B
919 941Right-handed alpha
Helix 41
AE5
B
945 965Right-handed alpha
Helix 42
AE6
B
966 968Right-handed 310
Helix 43
AE7
B
976 984Right-handed alpha
Helix 44
AE8
B
985 1033Right-handed alpha
Helix 45
AE9
B
1141 1145Right-handed 310
Helix 46
AF1
C
294 304Right-handed alpha
Helix 47
AF2
C
337 343Right-handed alpha
Helix 48
AF3
C
367 372Right-handed alpha
Helix 49
AF4
C
405 408Right-handed 310
Helix 50
AF5
C
416 421Right-handed alpha
Helix 51
AF6
C
438 443Right-handed alpha
Helix 52
AF7
C
737 744Right-handed alpha
Helix 53
AF8
C
746 755Right-handed alpha
Helix 54
AF9
C
758 783Right-handed alpha
Helix 55
AG1
C
816 826Right-handed alpha
Helix 56
AG2
C
849 855Right-handed alpha
Helix 57
AG3
C
866 885Right-handed alpha
Helix 58
AG4
C
886 890Right-handed 310
Helix 59
AG5
C
897 909Right-handed alpha
Helix 60
AG6
C
912 918Right-handed alpha
Helix 61
AG7
C
919 941Right-handed alpha
Helix 62
AG8
C
945 965Right-handed alpha
Helix 63
AG9
C
966 968Right-handed 310
Helix 64
AH1
C
976 984Right-handed alpha
Helix 65
AH2
C
985 1033Right-handed alpha
Helix 66
AH3
C
1140 1145Right-handed alpha
Helix 67
AH4
E
21 54Right-handed alpha
Helix 68
AH5
E
56 68Right-handed alpha
Helix 69
AH6
E
71 79Right-handed alpha
Helix 70
AH7
E
80 83Right-handed 310
Helix 71
AH8
E
93 102Right-handed alpha
Helix 72
AH9
E
105 109Right-handed 310
Helix 73
AI1
E
110 116Right-handed alpha
Helix 74
AI2
E
116 122Right-handed alpha
Helix 75
AI3
E
122 130Right-handed alpha
Helix 76
AI4
E
135 139Right-handed 310
Helix 77
AI5
E
146 151Right-handed alpha
Helix 78
AI6
E
157 173Right-handed alpha
Helix 79
AI7
E
174 178Right-handed 310
Helix 80
AI8
E
179 194Right-handed alpha
Helix 81
AI9
E
198 203Right-handed alpha
Helix 82
AJ1
E
204 206Right-handed 310
Helix 83
AJ2
E
220 223Right-handed 310
Helix 84
AJ3
E
224 230Right-handed alpha
Helix 85
AJ4
E
233 252Right-handed alpha
Helix 86
AJ5
E
296 301Right-handed 310
Helix 87
AJ6
E
303 317Right-handed alpha
Helix 88
AJ7
E
325 330Right-handed alpha
Helix 89
AJ8
E
366 386Right-handed alpha
Helix 90
AJ9
E
389 393Right-handed 310
Helix 91
AK1
E
397 401Right-handed 310
Helix 92
AK2
E
403 408Right-handed alpha
Helix 93
AK3
E
409 413Right-handed 310
Helix 94
AK4
E
418 422Right-handed 310
Helix 95
AK5
E
431 448Right-handed alpha
Helix 96
AK6
E
449 466Right-handed alpha
Helix 97
AK7
E
469 474Right-handed 310
Helix 98
AK8
E
475 484Right-handed alpha
Helix 99
AK9
E
498 502Right-handed 310
Helix 100
AL1
E
503 508Right-handed alpha
Helix 101
AL2
E
512 517Right-handed alpha
Helix 102
AL3
E
517 532Right-handed alpha
Helix 103
AL4
E
538 542Right-handed 310
Helix 104
AL5
E
547 561Right-handed alpha
Helix 105
AL6
E
565 575Right-handed alpha
Helix 106
AL7
E
581 587Right-handed alpha
Helix 107
AL8
E
588 600Right-handed alpha
Helix 108
AL9
F
21 41Right-handed alpha
Helix 109
AM1
F
41 54Right-handed alpha
Helix 110
AM2
F
56 68Right-handed alpha
Helix 111
AM3
F
68 73Right-handed alpha
Helix 112
AM4
F
73 79Right-handed alpha
Helix 113
AM5
F
80 82Right-handed 310
Helix 114
AM6
F
85 89Right-handed 310
Helix 115
AM7
F
91 100Right-handed alpha
Helix 116
AM8
F
101 103Right-handed 310
Helix 117
AM9
F
110 113Right-handed 310
Helix 118
AN1
F
114 130Right-handed alpha
Helix 119
AN2
F
135 139Right-handed 310
Helix 120
AN3
F
146 151Right-handed alpha
Helix 121
AN4
F
157 168Right-handed alpha
Helix 122
AN5
F
169 176Right-handed alpha
Helix 123
AN6
F
179 194Right-handed alpha
Helix 124
AN7
F
199 204Right-handed alpha
Helix 125
AN8
F
205 208Right-handed 310
Helix 126
AN9
F
219 229Right-handed alpha
Helix 127
AO1
F
230 232Right-handed 310
Helix 128
AO2
F
233 245Right-handed alpha
Helix 129
AO3
F
278 282Right-handed 310
Helix 130
AO4
F
295 299Right-handed 310
Helix 131
AO5
F
303 313Right-handed alpha
Helix 132
AO6
F
314 316Right-handed 310
Helix 133
AO7
F
325 330Right-handed alpha
Helix 134
AO8
F
367 385Right-handed alpha
Helix 135
AO9
F
389 393Right-handed 310
Helix 136
AP1
F
405 412Right-handed alpha
Helix 137
AP2
F
416 421Right-handed alpha
Helix 138
AP3
F
431 448Right-handed alpha
Helix 139
AP4
F
449 466Right-handed alpha
Helix 140
AP5
F
469 471Right-handed 310
Helix 141
AP6
F
472 482Right-handed alpha
Helix 142
AP7
F
503 509Right-handed alpha
Helix 143
AP8
F
512 516Right-handed 310
Helix 144
AP9
F
520 530Right-handed alpha
Helix 145
AQ1
F
538 542Right-handed 310
Helix 146
AQ2
F
549 559Right-handed alpha
Helix 147
AQ3
F
566 571Right-handed alpha
Helix 148
AQ4
F
582 586Right-handed 310
Helix 149
AQ5
F
588 599Right-handed alpha
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There are 45 sheets in PDB entry 8IFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 33first strand
Strand 2
A
62 64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 57first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 238anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
126 135anti-parallel
Strand 6
A
160 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 238anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
241 242anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 94first strand
Strand 2
A
188 197anti-parallel
Strand 3
A
200 209anti-parallel
Strand 4
A
224 230anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 319first strand
Strand 2
A
592 599anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
648 651anti-parallel
Strand 5
A
642 645anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
325 328first strand
Strand 2
A
539 543parallel
Strand 3
A
546 554anti-parallel
Strand 4
A
584 588anti-parallel
Strand 5
A
573 577anti-parallel
Strand 6
A
565 567anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 435anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
452 453first strand
Strand 2
A
493 494anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
654 660first strand
Strand 2
A
692 697parallel
Strand 3
A
670 674anti-parallel
Strand 4
A
664 667anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
701 704first strand
Strand 2
B
787 790parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
711 715first strand
Strand 2
A
1072 1076anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
718 728first strand
Strand 2
A
1059 1069anti-parallel
Strand 3
A
1047 1056anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
733 736first strand
Strand 2
A
858 861anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
787 790first strand
Strand 2
C
701 704parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1120 1122first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1081 1083anti-parallel
Strand 4
A
1133 1134parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1094 1097first strand
Strand 2
A
1102 1105anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 33first strand
Strand 2
B
62 64anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
38 39first strand
Strand 2
B
222 223parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
50 57first strand
Strand 2
B
271 279anti-parallel
Strand 3
B
285 290anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
225 229first strand
Strand 2
B
200 209anti-parallel
Strand 3
B
188 197anti-parallel
Strand 4
B
89 95anti-parallel
Strand 5
B
265 266anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
163 172first strand
Strand 2
B
126 133anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
103 107anti-parallel
Strand 5
B
237 238anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 319first strand
Strand 2
B
592 599anti-parallel
Strand 3
B
609 613anti-parallel
Strand 4
B
648 651anti-parallel
Strand 5
B
642 645anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
325 326first strand
Strand 2
B
539 543parallel
Strand 3
B
546 554anti-parallel
Strand 4
B
584 588anti-parallel
Strand 5
B
575 577anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 358first strand
Strand 2
B
393 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 436anti-parallel
Strand 5
B
374 379anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
452 453first strand
Strand 2
B
493 494anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
654 655first strand
Strand 2
B
692 696parallel
Strand 3
B
670 674anti-parallel
Strand 4
B
664 667anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
702 704first strand
Strand 2
C
788 790parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 728first strand
Strand 2
B
1059 1077anti-parallel
Strand 3
B
1047 1056anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 728first strand
Strand 2
B
1059 1077anti-parallel
Strand 3
B
1094 1097anti-parallel
Strand 4
B
1102 1105anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
733 736first strand
Strand 2
B
858 861anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1120 1122first strand
Strand 2
B
1086 1090anti-parallel
Strand 3
B
1081 1083anti-parallel
Strand 4
B
1133 1134parallel
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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
31 33first strand
Strand 2
C
62 67anti-parallel
Strand 3
C
265 269anti-parallel
Strand 4
C
89 94anti-parallel
Strand 5
C
188 197anti-parallel
Strand 6
C
200 209anti-parallel
Strand 7
C
224 229anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
49 57first strand
Strand 2
C
271 279anti-parallel
Strand 3
C
285 290anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
84 85first strand
Strand 2
C
237 241anti-parallel
Strand 3
C
103 107anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 121first strand
Strand 2
C
126 129anti-parallel
Strand 3
C
171 172anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
311 319first strand
Strand 2
C
592 599anti-parallel
Strand 3
C
609 613anti-parallel
Strand 4
C
648 651anti-parallel
Strand 5
C
642 645anti-parallel
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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
325 328first strand
Strand 2
C
538 543parallel
Strand 3
C
546 554anti-parallel
Strand 4
C
584 588anti-parallel
Strand 5
C
573 577anti-parallel
Strand 6
C
566 567anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
354 358first strand
Strand 2
C
394 403anti-parallel
Strand 3
C
507 516anti-parallel
Strand 4
C
431 437anti-parallel
Strand 5
C
379 380anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
654 660first strand
Strand 2
C
692 697parallel
Strand 3
C
670 674anti-parallel
Strand 4
C
664 667anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
711 728first strand
Strand 2
C
1059 1078anti-parallel
Strand 3
C
1047 1056anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
711 728first strand
Strand 2
C
1059 1078anti-parallel
Strand 3
C
1094 1097anti-parallel
Strand 4
C
1102 1105anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
733 736first strand
Strand 2
C
858 861anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1120 1122first strand
Strand 2
C
1086 1090anti-parallel
Strand 3
C
1081 1083anti-parallel
Strand 4
C
1133 1134parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il