Analysis of interatomic Contacts of Structural Units in PDB entry:
8IFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IFZ entry

There are 2 chains in PDB entry 8IFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 333GLY 526
A
 SER 20SER 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8IFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
364 366Right-handed 310
Helix 2
AA2
B
367 372Right-handed alpha
Helix 3
AA3
B
405 410Right-handed 310
Helix 4
AA4
B
416 422Right-handed alpha
Helix 5
AA5
A
21 54Right-handed alpha
Helix 6
AA6
A
56 80Right-handed alpha
Helix 7
AA7
A
85 89Right-handed 310
Helix 8
AA8
A
91 102Right-handed alpha
Helix 9
AA9
A
103 109Right-handed 310
Helix 10
AB1
A
115 130Right-handed alpha
Helix 11
AB2
A
135 139Right-handed 310
Helix 12
AB3
A
146 151Right-handed alpha
Helix 13
AB4
A
157 172Right-handed alpha
Helix 14
AB5
A
177 194Right-handed alpha
Helix 15
AB6
A
198 203Right-handed alpha
Helix 16
AB7
A
204 208Right-handed 310
Helix 17
AB8
A
221 232Right-handed alpha
Helix 18
AB9
A
233 252Right-handed alpha
Helix 19
AC1
A
278 283Right-handed alpha
Helix 20
AC2
A
303 317Right-handed alpha
Helix 21
AC3
A
324 328Right-handed 310
Helix 22
AC4
A
365 385Right-handed alpha
Helix 23
AC5
A
400 408Right-handed alpha
Helix 24
AC6
A
416 421Right-handed alpha
Helix 25
AC7
A
431 447Right-handed alpha
Helix 26
AC8
A
449 466Right-handed alpha
Helix 27
AC9
A
472 485Right-handed alpha
Helix 28
AD1
A
498 502Right-handed 310
Helix 29
AD2
A
513 532Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
548 561Right-handed alpha
Helix 32
AD5
A
565 575Right-handed alpha
Helix 33
AD6
A
582 587Right-handed alpha
Helix 34
AD7
A
588 599Right-handed alpha
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There are 5 sheets in PDB entry 8IFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
379 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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