Analysis of interatomic Contacts of Structural Units in PDB entry:
8IGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IGD entry

There are 4 chains in PDB entry 8IGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 83GLU 164
B
 SER 83GLU 164
C
 LYS 306VAL 353
D
 LYS 306LYS 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8IGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 96Right-handed alpha
Helix 2
AA2
A
142 161Right-handed alpha
Helix 3
AA3
B
84 96Right-handed alpha
Helix 4
AA4
B
142 161Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8IGD.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
338 343first strand
Strand 2
C
347 352anti-parallel
Strand 3
C
322 327anti-parallel
Strand 4
B
130 136parallel
Strand 5
B
116 125anti-parallel
Strand 6
B
102 107anti-parallel
Strand 7
A
102 108parallel
Strand 8
A
115 126anti-parallel
Strand 9
A
129 140anti-parallel
Strand 10
D
322 327parallel
Strand 11
D
347 351anti-parallel
Strand 12
D
339 343anti-parallel
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