Analysis of interatomic Contacts of Structural Units in PDB entry:
8IGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IGG entry

There are 4 chains in PDB entry 8IGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 49	ASN 582
A	GLY 63	HIS 610
B	GLY 49	ASN 582
C	GLY 63	HIS 610

There are 76 helices in PDB entry 8IGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	50	55	Right-handed alpha
Helix 2	AA2	E	65	84	Right-handed alpha
Helix 3	AA3	E	98	102	Right-handed 310
Helix 4	AA4	E	163	179	Right-handed alpha
Helix 5	AA5	E	198	201	Right-handed 310
Helix 6	AA6	E	202	226	Right-handed alpha
Helix 7	AA7	E	231	235	Right-handed 310
Helix 8	AA8	E	302	311	Right-handed alpha
Helix 9	AA9	E	342	351	Right-handed alpha
Helix 10	AB1	E	352	367	Right-handed 310
Helix 11	AB2	E	378	384	Right-handed 310
Helix 12	AB3	E	400	410	Right-handed alpha
Helix 13	AB4	E	428	439	Right-handed alpha
Helix 14	AB5	E	444	460	Right-handed alpha
Helix 15	AB6	E	462	466	Right-handed 310
Helix 16	AB7	E	497	499	Right-handed 310
Helix 17	AB8	E	501	509	Right-handed alpha
Helix 18	AB9	E	511	523	Right-handed alpha
Helix 19	AC1	E	528	543	Right-handed alpha
Helix 20	AC2	E	560	576	Right-handed alpha
Helix 21	AC3	A	64	82	Right-handed alpha
Helix 22	AC4	A	157	162	Right-handed alpha
Helix 23	AC5	A	164	177	Right-handed alpha
Helix 24	AC6	A	202	222	Right-handed alpha
Helix 25	AC7	A	232	237	Right-handed alpha
Helix 26	AC8	A	342	354	Right-handed alpha
Helix 27	AC9	A	357	364	Right-handed 310
Helix 28	AD1	A	378	386	Right-handed 310
Helix 29	AD2	A	400	412	Right-handed alpha
Helix 30	AD3	A	428	439	Right-handed alpha
Helix 31	AD4	A	443	457	Right-handed alpha
Helix 32	AD5	A	462	467	Right-handed alpha
Helix 33	AD6	A	495	499	Right-handed 310
Helix 34	AD7	A	500	509	Right-handed alpha
Helix 35	AD8	A	514	523	Right-handed alpha
Helix 36	AD9	A	528	544	Right-handed alpha
Helix 37	AE1	A	560	575	Right-handed alpha
Helix 38	AE2	A	597	601	Right-handed 310
Helix 39	AE3	B	50	55	Right-handed alpha
Helix 40	AE4	B	65	84	Right-handed alpha
Helix 41	AE5	B	98	102	Right-handed 310
Helix 42	AE6	B	163	179	Right-handed alpha
Helix 43	AE7	B	198	201	Right-handed 310
Helix 44	AE8	B	202	226	Right-handed alpha
Helix 45	AE9	B	231	235	Right-handed 310
Helix 46	AF1	B	302	311	Right-handed alpha
Helix 47	AF2	B	342	351	Right-handed alpha
Helix 48	AF3	B	352	367	Right-handed 310
Helix 49	AF4	B	378	384	Right-handed 310
Helix 50	AF5	B	400	410	Right-handed alpha
Helix 51	AF6	B	428	439	Right-handed alpha
Helix 52	AF7	B	444	460	Right-handed alpha
Helix 53	AF8	B	462	466	Right-handed 310
Helix 54	AF9	B	497	499	Right-handed 310
Helix 55	AG1	B	501	509	Right-handed alpha
Helix 56	AG2	B	511	523	Right-handed alpha
Helix 57	AG3	B	528	543	Right-handed alpha
Helix 58	AG4	B	560	576	Right-handed alpha
Helix 59	AG5	C	64	82	Right-handed alpha
Helix 60	AG6	C	157	162	Right-handed alpha
Helix 61	AG7	C	164	177	Right-handed alpha
Helix 62	AG8	C	202	222	Right-handed alpha
Helix 63	AG9	C	232	237	Right-handed alpha
Helix 64	AH1	C	342	354	Right-handed alpha
Helix 65	AH2	C	357	364	Right-handed 310
Helix 66	AH3	C	378	386	Right-handed 310
Helix 67	AH4	C	400	412	Right-handed alpha
Helix 68	AH5	C	428	439	Right-handed alpha
Helix 69	AH6	C	443	457	Right-handed alpha
Helix 70	AH7	C	462	467	Right-handed alpha
Helix 71	AH8	C	495	499	Right-handed 310
Helix 72	AH9	C	500	509	Right-handed alpha
Helix 73	AI1	C	514	523	Right-handed alpha
Helix 74	AI2	C	528	544	Right-handed alpha
Helix 75	AI3	C	560	575	Right-handed alpha
Helix 76	AI4	C	597	601	Right-handed 310

There are 22 sheets in PDB entry 8IGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	121	128	anti-parallel
Strand 4	E	184	187	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	107	111	anti-parallel
Strand 3	E	121	128	anti-parallel
Strand 4	E	191	192	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	145	first strand
Strand 2	E	148	154	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	266	271	anti-parallel
Strand 3	E	289	300	anti-parallel
Strand 4	E	324	331	anti-parallel
Strand 5	E	417	423	parallel
Strand 6	E	549	559	anti-parallel
Strand 7	E	481	487	anti-parallel
Strand 8	E	494	495	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	476	first strand
Strand 2	E	549	559	anti-parallel
Strand 3	E	417	423	anti-parallel
Strand 4	E	324	331	parallel
Strand 5	E	289	300	anti-parallel
Strand 6	E	266	271	anti-parallel
Strand 7	E	243	245	anti-parallel
Strand 8	E	578	579	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	261	262	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	106	114	anti-parallel
Strand 3	A	121	123	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	106	114	anti-parallel
Strand 3	A	127	129	anti-parallel
Strand 4	A	191	192	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	249	first strand
Strand 2	A	266	273	anti-parallel
Strand 3	A	289	301	anti-parallel
Strand 4	A	323	331	anti-parallel
Strand 5	A	413	423	parallel
Strand 6	A	549	559	anti-parallel
Strand 7	A	475	477	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	249	first strand
Strand 2	A	266	273	anti-parallel
Strand 3	A	289	301	anti-parallel
Strand 4	A	323	331	anti-parallel
Strand 5	A	413	423	parallel
Strand 6	A	549	559	anti-parallel
Strand 7	A	483	489	anti-parallel
Strand 8	A	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	261	262	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	107	111	anti-parallel
Strand 3	B	121	128	anti-parallel
Strand 4	B	184	187	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	107	111	anti-parallel
Strand 3	B	121	128	anti-parallel
Strand 4	B	191	192	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	145	first strand
Strand 2	B	148	154	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	289	300	anti-parallel
Strand 4	B	324	331	anti-parallel
Strand 5	B	417	423	parallel
Strand 6	B	549	559	anti-parallel
Strand 7	B	481	487	anti-parallel
Strand 8	B	494	495	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	549	559	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	324	331	parallel
Strand 5	B	289	300	anti-parallel
Strand 6	B	266	271	anti-parallel
Strand 7	B	243	245	anti-parallel
Strand 8	B	578	579	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	261	262	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	106	114	anti-parallel
Strand 3	C	121	123	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	106	114	anti-parallel
Strand 3	C	127	129	anti-parallel
Strand 4	C	191	192	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	249	first strand
Strand 2	C	266	273	anti-parallel
Strand 3	C	289	301	anti-parallel
Strand 4	C	323	331	anti-parallel
Strand 5	C	413	423	parallel
Strand 6	C	549	559	anti-parallel
Strand 7	C	475	477	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	249	first strand
Strand 2	C	266	273	anti-parallel
Strand 3	C	289	301	anti-parallel
Strand 4	C	323	331	anti-parallel
Strand 5	C	413	423	parallel
Strand 6	C	549	559	anti-parallel
Strand 7	C	483	489	anti-parallel
Strand 8	C	492	494	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	261	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IGG