Analysis of interatomic Contacts of Structural Units in PDB entry:
8IGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IGQ entry

There are 5 chains in PDB entry 8IGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 63GLN 188
A
 MET 1GLY 227
B
 MET 1VAL 225
D
 MET 1VAL 295
C
 MET 1VAL 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8IGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
71 87Right-handed alpha
Helix 2
AA2
E
89 100Right-handed alpha
Helix 3
AA3
E
100 105Right-handed alpha
Helix 4
AA4
E
105 110Right-handed alpha
Helix 5
AA5
E
132 137Right-handed alpha
Helix 6
AA6
E
137 157Right-handed alpha
Helix 7
AA7
E
158 160Right-handed 310
Helix 8
AA8
E
164 184Right-handed alpha
Helix 9
AA9
E
185 187Right-handed 310
Helix 10
AB1
A
44 51Right-handed alpha
Helix 11
AB2
A
97 102Right-handed alpha
Helix 12
AB3
A
119 124Right-handed alpha
Helix 13
AB4
A
146 152Right-handed alpha
Helix 14
AB5
A
171 181Right-handed alpha
Helix 15
AB6
A
181 187Right-handed alpha
Helix 16
AB7
B
42 51Right-handed alpha
Helix 17
AB8
B
79 83Right-handed 310
Helix 18
AB9
B
97 110Right-handed alpha
Helix 19
AC1
B
113 118Right-handed alpha
Helix 20
AC2
B
119 125Right-handed alpha
Helix 21
AC3
B
144 155Right-handed alpha
Helix 22
AC4
B
171 185Right-handed alpha
Helix 23
AC5
B
186 188Right-handed 310
Helix 24
AC6
B
201 206Right-handed alpha
Helix 25
AC7
D
4 8Right-handed 310
Helix 26
AC8
D
9 17Right-handed alpha
Helix 27
AC9
D
17 48Right-handed alpha
Helix 28
AD1
D
49 54Right-handed alpha
Helix 29
AD2
D
64 67Right-handed 310
Helix 30
AD3
D
75 85Right-handed alpha
Helix 31
AD4
D
98 110Right-handed alpha
Helix 32
AD5
D
132 134Right-handed 310
Helix 33
AD6
D
135 143Right-handed alpha
Helix 34
AD7
D
163 190Right-handed alpha
Helix 35
AD8
D
190 195Right-handed alpha
Helix 36
AD9
D
199 204Right-handed alpha
Helix 37
AE1
D
205 210Right-handed alpha
Helix 38
AE2
D
212 217Right-handed alpha
Helix 39
AE3
D
217 247Right-handed alpha
Helix 40
AE4
D
248 257Right-handed alpha
Helix 41
AE5
D
264 295Right-handed alpha
Helix 42
AE6
C
2 5Right-handed 310
Helix 43
AE7
C
6 17Right-handed alpha
Helix 44
AE8
C
22 52Right-handed alpha
Helix 45
AE9
C
63 69Right-handed alpha
Helix 46
AF1
C
75 86Right-handed alpha
Helix 47
AF2
C
98 102Right-handed 310
Helix 48
AF3
C
103 108Right-handed alpha
Helix 49
AF4
C
136 143Right-handed alpha
Helix 50
AF5
C
160 199Right-handed alpha
Helix 51
AF6
C
202 210Right-handed alpha
Helix 52
AF7
C
217 247Right-handed alpha
Helix 53
AF8
C
252 258Right-handed alpha
Helix 54
AF9
C
264 270Right-handed alpha
Helix 55
AG1
C
271 293Right-handed alpha
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There are 5 sheets in PDB entry 8IGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
61 62anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
208 212parallel
Strand 3
A
217 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
160 163parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
192 195parallel
Strand 3
B
32 36parallel
Strand 4
B
208 213parallel
Strand 5
B
216 220anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 97first strand
Strand 2
D
125 130anti-parallel
Strand 3
D
60 62anti-parallel
Strand 4
D
149 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il