Analysis of interatomic Contacts of Structural Units in PDB entry:
8IH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IH7 entry

There are 4 chains in PDB entry 8IH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLY 338
B
 LEU -2GLY 314
C
 SER 0GLY 338
D
 ASN -1GLY 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 8IH7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 23Right-handed 310
Helix 2
AA2
A
27 41Right-handed alpha
Helix 3
AA3
A
67 79Right-handed alpha
Helix 4
AA4
A
94 104Right-handed alpha
Helix 5
AA5
A
117 120Right-handed 310
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
A
146 161Right-handed alpha
Helix 9
AA9
A
175 190Right-handed alpha
Helix 10
AB1
A
206 217Right-handed alpha
Helix 11
AB2
A
225 229Right-handed 310
Helix 12
AB3
A
237 248Right-handed alpha
Helix 13
AB4
A
255 266Right-handed alpha
Helix 14
AB5
A
267 271Right-handed 310
Helix 15
AB6
A
278 288Right-handed alpha
Helix 16
AB7
A
292 305Right-handed alpha
Helix 17
AB8
A
307 318Right-handed alpha
Helix 18
AB9
A
325 337Right-handed alpha
Helix 19
AC1
B
14 28Right-handed alpha
Helix 20
AC2
B
43 52Right-handed alpha
Helix 21
AC3
B
59 67Right-handed alpha
Helix 22
AC4
B
68 71Right-handed 310
Helix 23
AC5
B
81 95Right-handed alpha
Helix 24
AC6
B
112 117Right-handed alpha
Helix 25
AC7
B
118 121Right-handed 310
Helix 26
AC8
B
130 147Right-handed alpha
Helix 27
AC9
B
164 170Right-handed alpha
Helix 28
AD1
B
170 185Right-handed alpha
Helix 29
AD2
B
219 236Right-handed alpha
Helix 30
AD3
B
288 307Right-handed alpha
Helix 31
AD4
C
16 22Right-handed alpha
Helix 32
AD5
C
27 41Right-handed alpha
Helix 33
AD6
C
67 79Right-handed alpha
Helix 34
AD7
C
94 104Right-handed alpha
Helix 35
AD8
C
117 120Right-handed 310
Helix 36
AD9
C
121 131Right-handed alpha
Helix 37
AE1
C
141 145Right-handed 310
Helix 38
AE2
C
146 161Right-handed alpha
Helix 39
AE3
C
175 190Right-handed alpha
Helix 40
AE4
C
206 217Right-handed alpha
Helix 41
AE5
C
225 229Right-handed 310
Helix 42
AE6
C
237 248Right-handed alpha
Helix 43
AE7
C
255 266Right-handed alpha
Helix 44
AE8
C
267 271Right-handed 310
Helix 45
AE9
C
278 287Right-handed alpha
Helix 46
AF1
C
292 304Right-handed alpha
Helix 47
AF2
C
307 318Right-handed alpha
Helix 48
AF3
C
325 338Right-handed alpha
Helix 49
AF4
D
14 28Right-handed alpha
Helix 50
AF5
D
43 52Right-handed alpha
Helix 51
AF6
D
59 66Right-handed alpha
Helix 52
AF7
D
67 71Right-handed 310
Helix 53
AF8
D
81 94Right-handed alpha
Helix 54
AF9
D
112 117Right-handed alpha
Helix 55
AG1
D
118 121Right-handed 310
Helix 56
AG2
D
130 147Right-handed alpha
Helix 57
AG3
D
164 170Right-handed alpha
Helix 58
AG4
D
170 185Right-handed alpha
Helix 59
AG5
D
219 236Right-handed alpha
Helix 60
AG6
D
288 309Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8IH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
45 47parallel
Strand 3
A
83 88parallel
Strand 4
A
108 114parallel
Strand 5
A
134 140parallel
Strand 6
A
164 168parallel
Strand 7
A
195 199parallel
Strand 8
A
221 224parallel
Strand 9
A
9 12parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
31 37parallel
Strand 3
B
6 11parallel
Strand 4
B
73 78parallel
Strand 5
B
98 101parallel
Strand 6
B
125 127parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 198first strand
Strand 2
B
151 159parallel
Strand 3
B
206 214anti-parallel
Strand 4
B
268 278anti-parallel
Strand 5
B
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 198first strand
Strand 2
B
151 159parallel
Strand 3
B
206 214anti-parallel
Strand 4
B
268 278anti-parallel
Strand 5
B
248 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 15first strand
Strand 2
C
45 48parallel
Strand 3
C
83 88parallel
Strand 4
C
106 114parallel
Strand 5
C
134 140parallel
Strand 6
C
164 168parallel
Strand 7
C
195 199parallel
Strand 8
C
221 224parallel
Strand 9
C
9 15parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
31 37parallel
Strand 3
D
6 11parallel
Strand 4
D
73 78parallel
Strand 5
D
98 101parallel
Strand 6
D
125 127parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 198first strand
Strand 2
D
151 159parallel
Strand 3
D
206 214anti-parallel
Strand 4
D
268 277anti-parallel
Strand 5
D
241 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 259first strand
Strand 2
D
265 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il