Analysis of interatomic Contacts of Structural Units in PDB entry:
8IH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IH8 entry

There are 4 chains in PDB entry 8IH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLY 117
C
 GLN 12ARG 140
B
 GLY -1ARG 116
D
 GLN 12ALA 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8IH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
60 75Right-handed alpha
Helix 3
AA3
A
89 96Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
107 116Right-handed alpha
Helix 6
AA6
C
25 27Right-handed 310
Helix 7
AA7
C
28 43Right-handed alpha
Helix 8
AA8
C
46 68Right-handed alpha
Helix 9
AA9
C
103 113Right-handed alpha
Helix 10
AB1
C
124 129Right-handed alpha
Helix 11
AB2
B
30 44Right-handed alpha
Helix 12
AB3
B
60 75Right-handed alpha
Helix 13
AB4
B
89 96Right-handed alpha
Helix 14
AB5
B
97 101Right-handed 310
Helix 15
AB6
B
107 115Right-handed alpha
Helix 16
AB7
D
25 27Right-handed 310
Helix 17
AB8
D
28 43Right-handed alpha
Helix 18
AB9
D
46 68Right-handed alpha
Helix 19
AC1
D
103 113Right-handed alpha
Helix 20
AC2
D
124 129Right-handed alpha
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There are 3 sheets in PDB entry 8IH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 14first strand
Strand 2
A
17 26anti-parallel
Strand 3
A
48 59parallel
Strand 4
A
79 83parallel
Strand 5
A
103 105parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
130 139anti-parallel
Strand 3
C
84 93anti-parallel
Strand 4
C
73 80anti-parallel
Strand 5
C
18 23anti-parallel
Strand 6
D
18 23anti-parallel
Strand 7
D
73 80anti-parallel
Strand 8
D
84 93anti-parallel
Strand 9
D
130 139anti-parallel
Strand 10
D
114 120anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 14first strand
Strand 2
B
17 26anti-parallel
Strand 3
B
48 59parallel
Strand 4
B
79 83parallel
Strand 5
B
103 105parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il