Analysis of interatomic Contacts of Structural Units in PDB entry:
8IIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IIB entry

There are 2 chains in PDB entry 8IIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 105MET 546
B
 ASP 106MET 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8IIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 120Right-handed alpha
Helix 2
AA2
A
124 128Right-handed 310
Helix 3
AA3
A
132 139Right-handed alpha
Helix 4
AA4
A
186 199Right-handed alpha
Helix 5
AA5
A
234 254Right-handed alpha
Helix 6
AA6
A
269 279Right-handed alpha
Helix 7
AA7
A
298 314Right-handed alpha
Helix 8
AA8
A
316 328Right-handed alpha
Helix 9
AA9
A
352 377Right-handed alpha
Helix 10
AB1
A
383 389Right-handed 310
Helix 11
AB2
A
413 424Right-handed alpha
Helix 12
AB3
A
444 447Right-handed 310
Helix 13
AB4
A
469 474Right-handed alpha
Helix 14
AB5
A
489 502Right-handed alpha
Helix 15
AB6
A
505 525Right-handed alpha
Helix 16
AB7
A
532 545Right-handed alpha
Helix 17
AB8
B
107 120Right-handed alpha
Helix 18
AB9
B
124 128Right-handed 310
Helix 19
AC1
B
132 138Right-handed alpha
Helix 20
AC2
B
184 199Right-handed alpha
Helix 21
AC3
B
233 254Right-handed alpha
Helix 22
AC4
B
269 278Right-handed alpha
Helix 23
AC5
B
298 314Right-handed alpha
Helix 24
AC6
B
316 328Right-handed alpha
Helix 25
AC7
B
354 377Right-handed alpha
Helix 26
AC8
B
383 389Right-handed 310
Helix 27
AC9
B
406 409Right-handed 310
Helix 28
AD1
B
413 424Right-handed alpha
Helix 29
AD2
B
469 474Right-handed alpha
Helix 30
AD3
B
489 502Right-handed alpha
Helix 31
AD4
B
505 525Right-handed alpha
Helix 32
AD5
B
532 545Right-handed alpha
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There are 7 sheets in PDB entry 8IIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 396first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
284 291anti-parallel
Strand 4
A
427 429anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
453 454anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
463 465anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 139first strand
Strand 2
B
147 148anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 396first strand
Strand 2
B
399 404anti-parallel
Strand 3
B
285 291anti-parallel
Strand 4
B
427 429anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 450first strand
Strand 2
B
453 454anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
B
463 465anti-parallel
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