Analysis of interatomic Contacts of Structural Units in PDB entry:
8IIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IIC entry

There are 2 chains in PDB entry 8IIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 56MET 546
B
 THR 55MET 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8IIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 120Right-handed alpha
Helix 2
AA2
A
124 128Right-handed 310
Helix 3
AA3
A
132 138Right-handed alpha
Helix 4
AA4
A
183 200Right-handed alpha
Helix 5
AA5
A
234 254Right-handed alpha
Helix 6
AA6
A
268 279Right-handed alpha
Helix 7
AA7
A
294 314Right-handed alpha
Helix 8
AA8
A
315 328Right-handed alpha
Helix 9
AA9
A
355 378Right-handed alpha
Helix 10
AB1
A
383 389Right-handed 310
Helix 11
AB2
A
407 411Right-handed 310
Helix 12
AB3
A
413 423Right-handed alpha
Helix 13
AB4
A
469 475Right-handed alpha
Helix 14
AB5
A
486 502Right-handed alpha
Helix 15
AB6
A
505 525Right-handed alpha
Helix 16
AB7
A
532 545Right-handed alpha
Helix 17
AB8
B
71 82Right-handed alpha
Helix 18
AB9
B
104 120Right-handed alpha
Helix 19
AC1
B
124 128Right-handed 310
Helix 20
AC2
B
132 138Right-handed alpha
Helix 21
AC3
B
183 199Right-handed alpha
Helix 22
AC4
B
232 254Right-handed alpha
Helix 23
AC5
B
269 279Right-handed alpha
Helix 24
AC6
B
297 314Right-handed alpha
Helix 25
AC7
B
315 327Right-handed alpha
Helix 26
AC8
B
329 334Right-handed alpha
Helix 27
AC9
B
338 343Right-handed alpha
Helix 28
AD1
B
355 378Right-handed alpha
Helix 29
AD2
B
383 389Right-handed 310
Helix 30
AD3
B
406 411Right-handed 310
Helix 31
AD4
B
413 424Right-handed alpha
Helix 32
AD5
B
469 475Right-handed alpha
Helix 33
AD6
B
485 502Right-handed alpha
Helix 34
AD7
B
505 525Right-handed alpha
Helix 35
AD8
B
532 545Right-handed alpha
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There are 7 sheets in PDB entry 8IIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
479 481anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
391 396anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
463 465anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
479 481anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 396first strand
Strand 2
B
399 404anti-parallel
Strand 3
B
285 292anti-parallel
Strand 4
B
426 430anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 450first strand
Strand 2
B
453 454anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
B
463 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il