Analysis of interatomic Contacts of Structural Units in PDB entry:
8IIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IIY entry

There are 4 chains in PDB entry 8IIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE -350THR 156
B
 ALA 1THR 11
C
 GLY 12GLY 13
C
 ALA 15LYS 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8IIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-336 -320Right-handed alpha
Helix 2
AA2
A
-310 -301Right-handed alpha
Helix 3
AA3
A
-286 -278Right-handed alpha
Helix 4
AA4
A
-270 -265Right-handed alpha
Helix 5
AA5
A
-262 -255Right-handed alpha
Helix 6
AA6
A
-224 -222Right-handed 310
Helix 7
AA7
A
-221 -211Right-handed alpha
Helix 8
AA8
A
-199 -188Right-handed alpha
Helix 9
AA9
A
-167 -151Right-handed alpha
Helix 10
AB1
A
-143 -133Right-handed alpha
Helix 11
AB2
A
-124 -122Right-handed 310
Helix 12
AB3
A
-121 -114Right-handed alpha
Helix 13
AB4
A
-80 -69Right-handed alpha
Helix 14
AB5
A
-66 -55Right-handed alpha
Helix 15
AB6
A
-48 -40Right-handed alpha
Helix 16
AB7
A
-38 -25Right-handed alpha
Helix 17
AB8
A
-17 1Right-handed alpha
Helix 18
AB9
A
4 18Right-handed alpha
Helix 19
AC1
A
58 61Right-handed 310
Helix 20
AC2
A
124 130Right-handed alpha
Helix 21
AC3
A
148 156Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8IIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-317 -314first strand
Strand 2
A
-345 -342parallel
Strand 3
A
-293 -289parallel
Strand 4
A
-94 -86anti-parallel
Strand 5
A
-246 -241anti-parallel
Strand 6
A
-51 -50anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-317 -314first strand
Strand 2
A
-345 -342parallel
Strand 3
A
-293 -289parallel
Strand 4
A
-94 -86anti-parallel
Strand 5
A
-24 -23parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-254 -253first strand
Strand 2
A
-250 -249anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-207 -205first strand
Strand 2
A
-130 -125parallel
Strand 3
A
-238 -234anti-parallel
Strand 4
A
-110 -107anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-185 -180first strand
Strand 2
A
-177 -170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
20 33anti-parallel
Strand 4
A
134 145anti-parallel
Strand 5
B
2 3anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
20 33anti-parallel
Strand 4
A
134 145anti-parallel
Strand 5
B
9 10anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
112 117anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il