Analysis of interatomic Contacts of Structural Units in PDB entry:
8IIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IIZ entry

There are 4 chains in PDB entry 8IIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -351THR 157
B
 ALA 1THR 11
C
 ALA 24ARG 26
C
 SER 28ALA 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8IIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-336 -320Right-handed alpha
Helix 2
AA2
A
-310 -300Right-handed alpha
Helix 3
AA3
A
-286 -279Right-handed alpha
Helix 4
AA4
A
-270 -265Right-handed alpha
Helix 5
AA5
A
-262 -255Right-handed alpha
Helix 6
AA6
A
-221 -211Right-handed alpha
Helix 7
AA7
A
-199 -188Right-handed alpha
Helix 8
AA8
A
-167 -151Right-handed alpha
Helix 9
AA9
A
-143 -133Right-handed alpha
Helix 10
AB1
A
-124 -122Right-handed 310
Helix 11
AB2
A
-121 -114Right-handed alpha
Helix 12
AB3
A
-80 -69Right-handed alpha
Helix 13
AB4
A
-66 -57Right-handed alpha
Helix 14
AB5
A
-48 -40Right-handed alpha
Helix 15
AB6
A
-38 -25Right-handed alpha
Helix 16
AB7
A
-17 0Right-handed alpha
Helix 17
AB8
A
4 18Right-handed alpha
Helix 18
AB9
A
58 61Right-handed 310
Helix 19
AC1
A
148 155Right-handed alpha
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There are 8 sheets in PDB entry 8IIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-318 -314first strand
Strand 2
A
-346 -342parallel
Strand 3
A
-293 -289parallel
Strand 4
A
-94 -86anti-parallel
Strand 5
A
-246 -241anti-parallel
Strand 6
A
-51 -50anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-318 -314first strand
Strand 2
A
-346 -342parallel
Strand 3
A
-293 -289parallel
Strand 4
A
-94 -86anti-parallel
Strand 5
A
-24 -23parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-254 -253first strand
Strand 2
A
-250 -249anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-128 -125first strand
Strand 2
A
-238 -234anti-parallel
Strand 3
A
-110 -107anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-185 -180first strand
Strand 2
A
-177 -170anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
20 33anti-parallel
Strand 4
A
134 145anti-parallel
Strand 5
B
2 3anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
20 33anti-parallel
Strand 4
A
134 145anti-parallel
Strand 5
B
9 10anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
112 117anti-parallel
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