Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IJ1 entry

There are 5 chains in PDB entry 8IJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 745
R	GLU 23	GLU 102
B	MET 1	PRO 97
C	MET 17	CYS 112
D	MET 1	SER 596

There are149 helices in PDB entry 8IJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	26	Right-handed alpha
Helix 2	AA2	A	31	47	Right-handed alpha
Helix 3	AA3	A	53	79	Right-handed alpha
Helix 4	AA4	A	82	105	Right-handed alpha
Helix 5	AA5	A	105	112	Right-handed alpha
Helix 6	AA6	A	112	117	Right-handed alpha
Helix 7	AA7	A	119	125	Right-handed alpha
Helix 8	AA8	A	138	151	Right-handed alpha
Helix 9	AA9	A	156	172	Right-handed alpha
Helix 10	AB1	A	177	192	Right-handed alpha
Helix 11	AB2	A	200	207	Right-handed alpha
Helix 12	AB3	A	207	230	Right-handed alpha
Helix 13	AB4	A	231	254	Right-handed alpha
Helix 14	AB5	A	255	257	Right-handed 310
Helix 15	AB6	A	258	273	Right-handed alpha
Helix 16	AB7	A	275	288	Right-handed alpha
Helix 17	AB8	A	290	304	Right-handed alpha
Helix 18	AB9	A	307	329	Right-handed alpha
Helix 19	AC1	A	336	357	Right-handed alpha
Helix 20	AC2	A	361	377	Right-handed alpha
Helix 21	AC3	A	386	400	Right-handed alpha
Helix 22	AC4	A	407	423	Right-handed alpha
Helix 23	AC5	A	427	445	Right-handed alpha
Helix 24	AC6	A	450	466	Right-handed alpha
Helix 25	AC7	A	467	496	Right-handed alpha
Helix 26	AC8	A	530	548	Right-handed alpha
Helix 27	AC9	A	579	587	Right-handed alpha
Helix 28	AD1	A	596	604	Right-handed alpha
Helix 29	AD2	A	606	621	Right-handed alpha
Helix 30	AD3	A	661	692	Right-handed alpha
Helix 31	AD4	A	696	708	Right-handed alpha
Helix 32	AD5	A	714	728	Right-handed alpha
Helix 33	AD6	R	36	40	Right-handed 310
Helix 34	AD7	R	81	90	Right-handed alpha
Helix 35	AD8	B	23	36	Right-handed alpha
Helix 36	AD9	B	56	61	Right-handed alpha
Helix 37	AE1	C	33	37	Right-handed alpha
Helix 38	AE2	C	39	47	Right-handed alpha
Helix 39	AE3	C	66	83	Right-handed alpha
Helix 40	AE4	C	98	111	Right-handed alpha
Helix 41	AE5	D	2	15	Right-handed alpha
Helix 42	AE6	D	16	24	Right-handed alpha
Helix 43	AE7	D	28	38	Right-handed alpha
Helix 44	AE8	D	48	57	Right-handed alpha
Helix 45	AE9	D	58	68	Right-handed alpha
Helix 46	AF1	D	90	99	Right-handed alpha
Helix 47	AF2	D	100	110	Right-handed alpha
Helix 48	AF3	D	123	132	Right-handed alpha
Helix 49	AF4	D	133	143	Right-handed alpha
Helix 50	AF5	D	156	165	Right-handed alpha
Helix 51	AF6	D	166	176	Right-handed alpha
Helix 52	AF7	D	189	198	Right-handed alpha
Helix 53	AF8	D	199	209	Right-handed alpha
Helix 54	AF9	D	221	229	Right-handed alpha
Helix 55	AG1	D	231	242	Right-handed alpha
Helix 56	AG2	D	245	263	Right-handed alpha
Helix 57	AG3	D	268	284	Right-handed alpha
Helix 58	AG4	D	299	303	Right-handed 310
Helix 59	AG5	D	310	318	Right-handed alpha
Helix 60	AG6	D	320	337	Right-handed alpha
Helix 61	AG7	D	340	342	Right-handed 310
Helix 62	AG8	D	343	358	Right-handed alpha
Helix 63	AG9	D	360	376	Right-handed alpha
Helix 64	AH1	D	381	398	Right-handed alpha
Helix 65	AH2	D	404	429	Right-handed alpha
Helix 66	AH3	D	433	457	Right-handed alpha
Helix 67	AH4	D	460	477	Right-handed alpha
Helix 68	AH5	D	486	493	Right-handed alpha
Helix 69	AH6	D	512	522	Right-handed alpha
Helix 70	AH7	D	536	541	Right-handed alpha
Helix 71	AH8	D	548	561	Right-handed alpha
Helix 72	AH9	D	575	580	Right-handed alpha
Helix 73	AI1	D	583	591	Right-handed alpha
Helix 74	AI2	D	596	608	Right-handed alpha
Helix 75	AI3	D	617	627	Right-handed alpha
Helix 76	AI4	F	9	25	Right-handed alpha
Helix 77	AI5	F	26	28	Right-handed 310
Helix 78	AI6	F	31	47	Right-handed alpha
Helix 79	AI7	F	53	79	Right-handed alpha
Helix 80	AI8	F	82	103	Right-handed alpha
Helix 81	AI9	F	105	112	Right-handed alpha
Helix 82	AJ1	F	112	117	Right-handed alpha
Helix 83	AJ2	F	119	125	Right-handed alpha
Helix 84	AJ3	F	138	151	Right-handed alpha
Helix 85	AJ4	F	155	161	Right-handed alpha
Helix 86	AJ5	F	163	171	Right-handed alpha
Helix 87	AJ6	F	177	192	Right-handed alpha
Helix 88	AJ7	F	200	207	Right-handed alpha
Helix 89	AJ8	F	207	230	Right-handed alpha
Helix 90	AJ9	F	231	254	Right-handed alpha
Helix 91	AK1	F	255	257	Right-handed 310
Helix 92	AK2	F	258	274	Right-handed alpha
Helix 93	AK3	F	274	288	Right-handed alpha
Helix 94	AK4	F	290	304	Right-handed alpha
Helix 95	AK5	F	307	329	Right-handed alpha
Helix 96	AK6	F	334	358	Right-handed alpha
Helix 97	AK7	F	361	377	Right-handed alpha
Helix 98	AK8	F	385	400	Right-handed alpha
Helix 99	AK9	F	407	425	Right-handed alpha
Helix 100	AL1	F	427	445	Right-handed alpha
Helix 101	AL2	F	450	465	Right-handed alpha
Helix 102	AL3	F	467	489	Right-handed alpha
Helix 103	AL4	F	530	548	Right-handed alpha
Helix 104	AL5	F	579	587	Right-handed alpha
Helix 105	AL6	F	596	604	Right-handed alpha
Helix 106	AL7	F	606	620	Right-handed alpha
Helix 107	AL8	F	661	688	Right-handed alpha
Helix 108	AL9	F	701	708	Right-handed alpha
Helix 109	AM1	F	714	728	Right-handed alpha
Helix 110	AM2	G	23	36	Right-handed alpha
Helix 111	AM3	G	56	61	Right-handed alpha
Helix 112	AM4	H	33	37	Right-handed alpha
Helix 113	AM5	H	39	47	Right-handed alpha
Helix 114	AM6	H	66	83	Right-handed alpha
Helix 115	AM7	H	98	111	Right-handed alpha
Helix 116	AM8	I	2	15	Right-handed alpha
Helix 117	AM9	I	16	25	Right-handed alpha
Helix 118	AN1	I	28	38	Right-handed alpha
Helix 119	AN2	I	48	57	Right-handed alpha
Helix 120	AN3	I	58	69	Right-handed alpha
Helix 121	AN4	I	91	99	Right-handed alpha
Helix 122	AN5	I	100	110	Right-handed alpha
Helix 123	AN6	I	123	132	Right-handed alpha
Helix 124	AN7	I	133	143	Right-handed alpha
Helix 125	AN8	I	156	165	Right-handed alpha
Helix 126	AN9	I	166	176	Right-handed alpha
Helix 127	AO1	I	189	198	Right-handed alpha
Helix 128	AO2	I	199	209	Right-handed alpha
Helix 129	AO3	I	221	229	Right-handed alpha
Helix 130	AO4	I	231	242	Right-handed alpha
Helix 131	AO5	I	245	263	Right-handed alpha
Helix 132	AO6	I	268	285	Right-handed alpha
Helix 133	AO7	I	310	316	Right-handed alpha
Helix 134	AO8	I	320	337	Right-handed alpha
Helix 135	AO9	I	343	355	Right-handed alpha
Helix 136	AP1	I	360	377	Right-handed alpha
Helix 137	AP2	I	381	399	Right-handed alpha
Helix 138	AP3	I	404	429	Right-handed alpha
Helix 139	AP4	I	433	457	Right-handed alpha
Helix 140	AP5	I	460	477	Right-handed alpha
Helix 141	AP6	I	486	493	Right-handed alpha
Helix 142	AP7	I	512	522	Right-handed alpha
Helix 143	AP8	I	529	533	Right-handed 310
Helix 144	AP9	I	535	539	Right-handed 310
Helix 145	AQ1	I	548	561	Right-handed alpha
Helix 146	AQ2	I	575	580	Right-handed alpha
Helix 147	AQ3	I	584	593	Right-handed alpha
Helix 148	AQ4	I	596	608	Right-handed alpha
Helix 149	AQ5	I	617	627	Right-handed alpha

There are 14 sheets in PDB entry 8IJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	513	first strand
Strand 2	R	26	34	parallel
Strand 3	A	552	555	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	513	first strand
Strand 2	R	26	34	parallel
Strand 3	A	561	566	anti-parallel
Strand 4	A	573	578	anti-parallel
Strand 5	A	650	652	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	595	first strand
Strand 2	A	637	640	anti-parallel
Strand 3	A	623	625	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	695	first strand
Strand 2	A	740	743	anti-parallel
Strand 3	A	731	733	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	70	72	first strand
Strand 2	R	78	80	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	93	94	first strand
Strand 2	R	99	100	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	5	9	parallel
Strand 4	B	12	16	anti-parallel
Strand 5	C	28	32	parallel
Strand 6	C	18	22	anti-parallel
Strand 7	C	59	61	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	84	85	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	561	566	first strand
Strand 2	F	573	578	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	593	595	first strand
Strand 2	F	637	640	anti-parallel
Strand 3	F	623	625	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	75	first strand
Strand 2	G	5	9	parallel
Strand 3	G	12	16	anti-parallel
Strand 4	H	28	32	parallel
Strand 5	H	18	22	anti-parallel
Strand 6	H	59	61	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	50	51	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	77	first strand
Strand 2	I	89	90	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	81	first strand
Strand 2	I	84	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ1