Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IJ5 entry

There are 2 chains in PDB entry 8IJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 86ASP 458
E
 PHE 31ILE 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8IJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
150 157Right-handed alpha
Helix 2
AA2
B
160 169Right-handed alpha
Helix 3
AA3
B
187 191Right-handed 310
Helix 4
AA4
B
225 234Right-handed alpha
Helix 5
AA5
B
247 258Right-handed alpha
Helix 6
AA6
B
319 328Right-handed alpha
Helix 7
AA7
B
340 349Right-handed alpha
Helix 8
AA8
B
365 378Right-handed alpha
Helix 9
AA9
E
205 210Right-handed alpha
Helix 10
AB1
E
217 224Right-handed alpha
Helix 11
AB2
E
244 248Right-handed 310
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There are 18 sheets in PDB entry 8IJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
456 457parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
420 428anti-parallel
Strand 3
B
130 131anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
420 428anti-parallel
Strand 3
B
393 399anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 223first strand
Strand 2
B
175 182anti-parallel
Strand 3
B
138 145parallel
Strand 4
B
269 276parallel
Strand 5
B
331 336parallel
Strand 6
B
354 358parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 413first strand
Strand 2
B
380 386anti-parallel
Strand 3
B
440 444anti-parallel
Strand 4
B
451 453anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
461 466anti-parallel
Strand 3
E
451 456anti-parallel
Strand 4
E
434 442anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 56first strand
Strand 2
E
65 70anti-parallel
Strand 3
E
85 89anti-parallel
Strand 4
E
97 98anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 118first strand
Strand 2
E
143 144anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 131first strand
Strand 2
E
134 139anti-parallel
Strand 3
E
157 161anti-parallel
Strand 4
E
166 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 192first strand
Strand 2
E
200 203anti-parallel
Strand 3
E
212 215anti-parallel
Strand 4
E
238 239anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
256 259first strand
Strand 2
E
268 273anti-parallel
Strand 3
E
282 285anti-parallel
Strand 4
E
295 298anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
310 313first strand
Strand 2
E
322 327anti-parallel
Strand 3
E
344 350anti-parallel
Strand 4
E
356 362anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
331 333first strand
Strand 2
E
339 341anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
374 378first strand
Strand 2
E
387 392anti-parallel
Strand 3
E
402 409anti-parallel
Strand 4
E
412 413anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
374 378first strand
Strand 2
E
387 392anti-parallel
Strand 3
E
402 409anti-parallel
Strand 4
E
419 422anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
564 568first strand
Strand 2
E
505 513anti-parallel
Strand 3
E
470 475anti-parallel
Strand 4
E
607 608parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
520 521first strand
Strand 2
E
557 558anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
525 528first strand
Strand 2
E
588 591anti-parallel
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