Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IJ7 entry

There are 4 chains in PDB entry 8IJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 251
B
 LYS 3VAL 251
C
 ARG 4VAL 251
D
 LYS 3VAL 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8IJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
64 79Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
148 169Right-handed alpha
Helix 9
AA9
A
186 193Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
A
218 231Right-handed alpha
Helix 12
AB3
A
232 235Right-handed 310
Helix 13
AB4
B
17 30Right-handed alpha
Helix 14
AB5
B
40 52Right-handed alpha
Helix 15
AB6
B
64 79Right-handed alpha
Helix 16
AB7
B
101 113Right-handed alpha
Helix 17
AB8
B
113 124Right-handed alpha
Helix 18
AB9
B
125 127Right-handed 310
Helix 19
AC1
B
138 142Right-handed 310
Helix 20
AC2
B
148 169Right-handed alpha
Helix 21
AC3
B
186 194Right-handed alpha
Helix 22
AC4
B
196 211Right-handed alpha
Helix 23
AC5
B
218 231Right-handed alpha
Helix 24
AC6
B
232 235Right-handed 310
Helix 25
AC7
C
17 30Right-handed alpha
Helix 26
AC8
C
40 52Right-handed alpha
Helix 27
AC9
C
64 79Right-handed alpha
Helix 28
AD1
C
101 113Right-handed alpha
Helix 29
AD2
C
113 124Right-handed alpha
Helix 30
AD3
C
125 127Right-handed 310
Helix 31
AD4
C
138 142Right-handed 310
Helix 32
AD5
C
148 169Right-handed alpha
Helix 33
AD6
C
186 194Right-handed alpha
Helix 34
AD7
C
196 211Right-handed alpha
Helix 35
AD8
C
218 231Right-handed alpha
Helix 36
AD9
C
232 235Right-handed 310
Helix 37
AE1
D
17 30Right-handed alpha
Helix 38
AE2
D
40 52Right-handed alpha
Helix 39
AE3
D
64 79Right-handed alpha
Helix 40
AE4
D
101 113Right-handed alpha
Helix 41
AE5
D
113 124Right-handed alpha
Helix 42
AE6
D
125 127Right-handed 310
Helix 43
AE7
D
138 142Right-handed 310
Helix 44
AE8
D
148 169Right-handed alpha
Helix 45
AE9
D
186 194Right-handed alpha
Helix 46
AF1
D
196 211Right-handed alpha
Helix 47
AF2
D
218 231Right-handed alpha
Helix 48
AF3
D
232 237Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8IJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
84 87parallel
Strand 5
A
132 136parallel
Strand 6
A
175 181parallel
Strand 7
A
241 244parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
84 87parallel
Strand 5
B
132 136parallel
Strand 6
B
175 181parallel
Strand 7
B
241 244parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 59first strand
Strand 2
C
33 38parallel
Strand 3
C
9 13parallel
Strand 4
C
84 87parallel
Strand 5
C
132 136parallel
Strand 6
C
175 181parallel
Strand 7
C
241 244parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 59first strand
Strand 2
D
33 38parallel
Strand 3
D
9 13parallel
Strand 4
D
84 87parallel
Strand 5
D
132 136parallel
Strand 6
D
175 181parallel
Strand 7
D
241 244parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il