Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IJ8 entry

There are 8 chains in PDB entry 8IJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	VAL 251
B	SER 2	VAL 251
C	LYS 3	VAL 251
D	LYS 3	VAL 251
E	LYS 3	VAL 251
F	LYS 3	VAL 251
G	ARG 4	VAL 251
H	LEU 5	VAL 251

There are 96 helices in PDB entry 8IJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	30	Right-handed alpha
Helix 2	AA2	A	40	52	Right-handed alpha
Helix 3	AA3	A	64	79	Right-handed alpha
Helix 4	AA4	A	101	113	Right-handed alpha
Helix 5	AA5	A	113	124	Right-handed alpha
Helix 6	AA6	A	125	127	Right-handed 310
Helix 7	AA7	A	138	142	Right-handed 310
Helix 8	AA8	A	148	169	Right-handed alpha
Helix 9	AA9	A	186	194	Right-handed alpha
Helix 10	AB1	A	196	211	Right-handed alpha
Helix 11	AB2	A	218	231	Right-handed alpha
Helix 12	AB3	A	232	235	Right-handed 310
Helix 13	AB4	B	17	30	Right-handed alpha
Helix 14	AB5	B	40	52	Right-handed alpha
Helix 15	AB6	B	64	79	Right-handed alpha
Helix 16	AB7	B	101	113	Right-handed alpha
Helix 17	AB8	B	113	124	Right-handed alpha
Helix 18	AB9	B	125	127	Right-handed 310
Helix 19	AC1	B	138	142	Right-handed 310
Helix 20	AC2	B	148	169	Right-handed alpha
Helix 21	AC3	B	186	194	Right-handed alpha
Helix 22	AC4	B	196	211	Right-handed alpha
Helix 23	AC5	B	218	231	Right-handed alpha
Helix 24	AC6	B	232	235	Right-handed 310
Helix 25	AC7	C	17	30	Right-handed alpha
Helix 26	AC8	C	40	52	Right-handed alpha
Helix 27	AC9	C	64	79	Right-handed alpha
Helix 28	AD1	C	101	113	Right-handed alpha
Helix 29	AD2	C	113	124	Right-handed alpha
Helix 30	AD3	C	125	127	Right-handed 310
Helix 31	AD4	C	138	142	Right-handed 310
Helix 32	AD5	C	148	169	Right-handed alpha
Helix 33	AD6	C	186	194	Right-handed alpha
Helix 34	AD7	C	196	211	Right-handed alpha
Helix 35	AD8	C	218	231	Right-handed alpha
Helix 36	AD9	C	232	235	Right-handed 310
Helix 37	AE1	D	17	30	Right-handed alpha
Helix 38	AE2	D	40	52	Right-handed alpha
Helix 39	AE3	D	64	79	Right-handed alpha
Helix 40	AE4	D	101	113	Right-handed alpha
Helix 41	AE5	D	113	124	Right-handed alpha
Helix 42	AE6	D	125	127	Right-handed 310
Helix 43	AE7	D	138	142	Right-handed 310
Helix 44	AE8	D	148	170	Right-handed alpha
Helix 45	AE9	D	186	194	Right-handed alpha
Helix 46	AF1	D	196	211	Right-handed alpha
Helix 47	AF2	D	218	231	Right-handed alpha
Helix 48	AF3	D	232	235	Right-handed 310
Helix 49	AF4	E	17	30	Right-handed alpha
Helix 50	AF5	E	40	52	Right-handed alpha
Helix 51	AF6	E	64	79	Right-handed alpha
Helix 52	AF7	E	101	113	Right-handed alpha
Helix 53	AF8	E	113	124	Right-handed alpha
Helix 54	AF9	E	125	127	Right-handed 310
Helix 55	AG1	E	138	143	Right-handed 310
Helix 56	AG2	E	148	169	Right-handed alpha
Helix 57	AG3	E	186	194	Right-handed alpha
Helix 58	AG4	E	196	211	Right-handed alpha
Helix 59	AG5	E	218	231	Right-handed alpha
Helix 60	AG6	E	232	235	Right-handed 310
Helix 61	AG7	F	17	30	Right-handed alpha
Helix 62	AG8	F	40	52	Right-handed alpha
Helix 63	AG9	F	64	79	Right-handed alpha
Helix 64	AH1	F	101	113	Right-handed alpha
Helix 65	AH2	F	113	124	Right-handed alpha
Helix 66	AH3	F	125	127	Right-handed 310
Helix 67	AH4	F	138	142	Right-handed 310
Helix 68	AH5	F	148	169	Right-handed alpha
Helix 69	AH6	F	186	194	Right-handed alpha
Helix 70	AH7	F	196	211	Right-handed alpha
Helix 71	AH8	F	218	231	Right-handed alpha
Helix 72	AH9	F	232	235	Right-handed 310
Helix 73	AI1	G	17	30	Right-handed alpha
Helix 74	AI2	G	40	52	Right-handed alpha
Helix 75	AI3	G	64	78	Right-handed alpha
Helix 76	AI4	G	101	113	Right-handed alpha
Helix 77	AI5	G	113	124	Right-handed alpha
Helix 78	AI6	G	125	127	Right-handed 310
Helix 79	AI7	G	138	142	Right-handed 310
Helix 80	AI8	G	148	169	Right-handed alpha
Helix 81	AI9	G	186	194	Right-handed alpha
Helix 82	AJ1	G	196	211	Right-handed alpha
Helix 83	AJ2	G	218	231	Right-handed alpha
Helix 84	AJ3	G	232	235	Right-handed 310
Helix 85	AJ4	H	17	30	Right-handed alpha
Helix 86	AJ5	H	40	52	Right-handed alpha
Helix 87	AJ6	H	64	79	Right-handed alpha
Helix 88	AJ7	H	101	113	Right-handed alpha
Helix 89	AJ8	H	113	124	Right-handed alpha
Helix 90	AJ9	H	125	127	Right-handed 310
Helix 91	AK1	H	138	142	Right-handed 310
Helix 92	AK2	H	148	169	Right-handed alpha
Helix 93	AK3	H	186	193	Right-handed alpha
Helix 94	AK4	H	203	211	Right-handed alpha
Helix 95	AK5	H	218	231	Right-handed alpha
Helix 96	AK6	H	232	235	Right-handed 310

There are 8 sheets in PDB entry 8IJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	33	38	parallel
Strand 3	A	9	13	parallel
Strand 4	A	84	87	parallel
Strand 5	A	132	136	parallel
Strand 6	A	175	181	parallel
Strand 7	A	241	244	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	33	38	parallel
Strand 3	B	9	13	parallel
Strand 4	B	84	87	parallel
Strand 5	B	132	136	parallel
Strand 6	B	175	181	parallel
Strand 7	B	241	244	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	33	38	parallel
Strand 3	C	9	13	parallel
Strand 4	C	84	87	parallel
Strand 5	C	132	136	parallel
Strand 6	C	175	181	parallel
Strand 7	C	241	244	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	33	38	parallel
Strand 3	D	9	13	parallel
Strand 4	D	84	87	parallel
Strand 5	D	132	136	parallel
Strand 6	D	175	181	parallel
Strand 7	D	241	244	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	59	first strand
Strand 2	E	33	38	parallel
Strand 3	E	9	13	parallel
Strand 4	E	84	87	parallel
Strand 5	E	132	136	parallel
Strand 6	E	175	181	parallel
Strand 7	E	241	244	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	59	first strand
Strand 2	F	33	38	parallel
Strand 3	F	9	13	parallel
Strand 4	F	84	87	parallel
Strand 5	F	132	136	parallel
Strand 6	F	175	181	parallel
Strand 7	F	241	244	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	59	first strand
Strand 2	G	33	38	parallel
Strand 3	G	9	13	parallel
Strand 4	G	84	87	parallel
Strand 5	G	132	136	parallel
Strand 6	G	175	181	parallel
Strand 7	G	241	244	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	33	38	parallel
Strand 3	H	9	13	parallel
Strand 4	H	84	87	parallel
Strand 5	H	132	136	parallel
Strand 6	H	175	181	parallel
Strand 7	H	241	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJ8