Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IJD entry

There are 5 chains in PDB entry 8IJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	PHE 301
B	LEU 4	ASN 340
C	THR 4	PHE 354
G	SER 8	GLU 63
S	ASP 1	LEU 235

There are 26 helices in PDB entry 8IJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	55	Right-handed alpha
Helix 2	AA2	A	60	89	Right-handed alpha
Helix 3	AA3	A	97	131	Right-handed alpha
Helix 4	AA4	A	134	138	Right-handed 310
Helix 5	AA5	A	140	164	Right-handed alpha
Helix 6	AA6	A	187	218	Right-handed alpha
Helix 7	AA7	A	223	261	Right-handed alpha
Helix 8	AA8	A	268	288	Right-handed alpha
Helix 9	AA9	A	288	296	Right-handed alpha
Helix 10	AB1	B	5	25	Right-handed alpha
Helix 11	AB2	B	29	35	Right-handed alpha
Helix 12	AB3	C	6	32	Right-handed alpha
Helix 13	AB4	C	45	51	Right-handed alpha
Helix 14	AB5	C	207	212	Right-handed alpha
Helix 15	AB6	C	213	216	Right-handed 310
Helix 16	AB7	C	228	232	Right-handed 310
Helix 17	AB8	C	242	255	Right-handed alpha
Helix 18	AB9	C	270	281	Right-handed alpha
Helix 19	AC1	C	282	286	Right-handed 310
Helix 20	AC2	C	295	310	Right-handed alpha
Helix 21	AC3	C	329	351	Right-handed alpha
Helix 22	AC4	G	9	24	Right-handed alpha
Helix 23	AC5	G	29	45	Right-handed alpha
Helix 24	AC6	S	28	32	Right-handed 310
Helix 25	AC7	S	53	56	Right-handed 310
Helix 26	AC8	S	87	91	Right-handed 310

There are 14 sheets in PDB entry 8IJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	174	176	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	194	200	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	322	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	19	25	anti-parallel
Strand 3	S	78	82	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	95	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	95	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	98	99	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	144	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	213	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJD