Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IJM entry

There are 2 chains in PDB entry 8IJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51TYR 1036
B
 THR 28SER 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8IJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 69Right-handed alpha
Helix 2
AA2
A
77 89Right-handed alpha
Helix 3
AA3
A
101 110Right-handed alpha
Helix 4
AA4
A
112 134Right-handed alpha
Helix 5
AA5
A
139 162Right-handed alpha
Helix 6
AA6
A
164 173Right-handed alpha
Helix 7
AA7
A
195 197Right-handed 310
Helix 8
AA8
A
273 277Right-handed 310
Helix 9
AA9
A
294 325Right-handed alpha
Helix 10
AB1
A
328 343Right-handed alpha
Helix 11
AB2
A
348 366Right-handed alpha
Helix 12
AB3
A
372 380Right-handed alpha
Helix 13
AB4
A
427 441Right-handed alpha
Helix 14
AB5
A
462 476Right-handed alpha
Helix 15
AB6
A
479 486Right-handed alpha
Helix 16
AB7
A
522 529Right-handed alpha
Helix 17
AB8
A
543 560Right-handed alpha
Helix 18
AB9
A
610 621Right-handed alpha
Helix 19
AC1
A
634 644Right-handed alpha
Helix 20
AC2
A
652 661Right-handed alpha
Helix 21
AC3
A
668 672Right-handed 310
Helix 22
AC4
A
678 684Right-handed alpha
Helix 23
AC5
A
686 697Right-handed alpha
Helix 24
AC6
A
709 718Right-handed alpha
Helix 25
AC7
A
719 721Right-handed 310
Helix 26
AC8
A
730 732Right-handed 310
Helix 27
AC9
A
733 740Right-handed alpha
Helix 28
AD1
A
751 758Right-handed alpha
Helix 29
AD2
A
768 794Right-handed alpha
Helix 30
AD3
A
799 808Right-handed alpha
Helix 31
AD4
A
817 826Right-handed alpha
Helix 32
AD5
A
828 834Right-handed alpha
Helix 33
AD6
A
858 867Right-handed alpha
Helix 34
AD7
A
871 887Right-handed alpha
Helix 35
AD8
A
891 895Right-handed 310
Helix 36
AD9
A
898 903Right-handed alpha
Helix 37
AE1
A
919 941Right-handed alpha
Helix 38
AE2
A
943 948Right-handed alpha
Helix 39
AE3
A
955 960Right-handed alpha
Helix 40
AE4
A
965 984Right-handed alpha
Helix 41
AE5
A
998 1003Right-handed alpha
Helix 42
AE6
A
1004 1025Right-handed alpha
Helix 43
AE7
A
1029 1034Right-handed alpha
Helix 44
AE8
B
37 58Right-handed alpha
Helix 45
AE9
B
59 61Right-handed 310
Helix 46
AF1
B
98 110Right-handed alpha
Helix 47
AF2
B
111 117Right-handed 310
Helix 48
AF3
B
152 156Right-handed 310
Helix 49
AF4
B
218 226Right-handed alpha
Helix 50
AF5
B
232 236Right-handed 310
Helix 51
AF6
B
242 244Right-handed 310
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There are 11 sheets in PDB entry 8IJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
190 193anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
265 270anti-parallel
Strand 3
A
215 220anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
260 263anti-parallel
Strand 3
A
223 225anti-parallel
Strand 4
A
238 239anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
760 762anti-parallel
Strand 3
A
744 745parallel
Strand 4
A
724 728parallel
Strand 5
A
384 387parallel
Strand 6
A
624 627parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
399 405anti-parallel
Strand 3
A
600 604anti-parallel
Strand 4
A
562 571anti-parallel
Strand 5
A
516 521anti-parallel
Strand 6
A
503 505anti-parallel
Strand 7
A
488 491anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 535first strand
Strand 2
A
538 541anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 677first strand
Strand 2
A
699 702parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
910 911first strand
Strand 2
A
917 918anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
260 266anti-parallel
Strand 4
B
227 231anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
295 302parallel
Strand 3
B
272 279anti-parallel
Strand 4
B
209 216anti-parallel
Strand 5
B
238 240anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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