Analysis of interatomic Contacts of Structural Units in PDB entry:
8IJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IJU entry

There is 1 chain in PDB entry 8IJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13ILE 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8IJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
21 31Right-handed alpha
Helix 3
AA3
A
37 48Right-handed alpha
Helix 4
AA4
A
62 75Right-handed alpha
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
140 150Right-handed alpha
Helix 8
AA8
A
165 172Right-handed alpha
Helix 9
AA9
A
172 186Right-handed alpha
Helix 10
AB1
A
203 209Right-handed alpha
Helix 11
AB2
A
219 227Right-handed alpha
Helix 12
AB3
A
228 230Right-handed 310
Helix 13
AB4
A
238 240Right-handed 310
Helix 14
AB5
A
241 253Right-handed alpha
Helix 15
AB6
A
264 278Right-handed alpha
Helix 16
AB7
A
290 304Right-handed alpha
Helix 17
AB8
A
335 344Right-handed alpha
Helix 18
AB9
A
361 376Right-handed alpha
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There are 2 sheets in PDB entry 8IJU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
136 139parallel
Strand 3
A
84 87parallel
Strand 4
A
160 163parallel
Strand 5
A
191 196parallel
Strand 6
A
53 56parallel
Strand 7
A
215 218parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
308 311parallel
Strand 3
A
258 261parallel
Strand 4
A
326 329parallel
Strand 5
A
354 359parallel
Strand 6
A
231 236parallel
Strand 7
A
380 381parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il