Analysis of interatomic Contacts of Structural Units in PDB entry:
8IKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IKX entry

There is 1 chain in PDB entry 8IKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 49HIS 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 8IKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 57Right-handed 310
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
122 127Right-handed alpha
Helix 4
AA4
A
154 159Right-handed alpha
Helix 5
AA5
A
392 396Right-handed 310
Helix 6
AA6
A
423 429Right-handed alpha
Helix 7
AA7
A
430 433Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8IKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
84 87parallel
Strand 3
A
110 113parallel
Strand 4
A
140 145parallel
Strand 5
A
180 185parallel
Strand 6
A
203 208parallel
Strand 7
A
230 240parallel
Strand 8
A
211 213parallel
Strand 9
A
188 190parallel
Strand 10
A
149 151parallel
Strand 11
A
116 118parallel
Strand 12
A
92 94parallel
Strand 13
A
61 65parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
84 87parallel
Strand 3
A
110 113parallel
Strand 4
A
140 145parallel
Strand 5
A
180 185parallel
Strand 6
A
203 208parallel
Strand 7
A
230 240parallel
Strand 8
A
252 262parallel
Strand 9
A
279 293parallel
Strand 10
A
308 324parallel
Strand 11
A
348 361parallel
Strand 12
A
376 388parallel
Strand 13
A
403 407parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
134 137parallel
Strand 3
A
174 177parallel
Strand 4
A
197 200parallel
Strand 5
A
224 227parallel
Strand 6
A
246 248parallel
Strand 7
A
268 273parallel
Strand 8
A
297 303parallel
Strand 9
A
326 331parallel
Strand 10
A
366 369parallel
Strand 11
A
399 401parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il