Analysis of interatomic Contacts of Structural Units in PDB entry:
8ILJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ILJ entry

There are 2 chains in PDB entry 8ILJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 281
B
 MET 1ALA 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8ILJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 41Right-handed 310
Helix 2
AA2
A
58 64Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
118 125Right-handed alpha
Helix 5
AA5
A
125 135Right-handed alpha
Helix 6
AA6
A
148 161Right-handed alpha
Helix 7
AA7
A
176 179Right-handed 310
Helix 8
AA8
A
180 192Right-handed alpha
Helix 9
AA9
A
194 201Right-handed 310
Helix 10
AB1
A
202 210Right-handed alpha
Helix 11
AB2
A
234 246Right-handed alpha
Helix 12
AB3
A
260 280Right-handed alpha
Helix 13
AB4
B
36 42Right-handed 310
Helix 14
AB5
B
58 64Right-handed alpha
Helix 15
AB6
B
66 74Right-handed alpha
Helix 16
AB7
B
118 125Right-handed alpha
Helix 17
AB8
B
125 135Right-handed alpha
Helix 18
AB9
B
148 161Right-handed alpha
Helix 19
AC1
B
176 179Right-handed 310
Helix 20
AC2
B
180 192Right-handed alpha
Helix 21
AC3
B
194 201Right-handed 310
Helix 22
AC4
B
202 210Right-handed alpha
Helix 23
AC5
B
234 246Right-handed alpha
Helix 24
AC6
B
260 280Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8ILJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
28 35anti-parallel
Strand 4
A
76 79anti-parallel
Strand 5
A
44 50parallel
Strand 6
A
137 146parallel
Strand 7
A
165 171parallel
Strand 8
A
218 223parallel
Strand 9
A
249 254parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 10first strand
Strand 2
B
13 22anti-parallel
Strand 3
B
27 35anti-parallel
Strand 4
B
76 79anti-parallel
Strand 5
B
44 50parallel
Strand 6
B
137 146parallel
Strand 7
B
165 171parallel
Strand 8
B
218 223parallel
Strand 9
B
249 254parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il