Analysis of interatomic Contacts of Structural Units in PDB entry:
8ILR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ILR entry

There are 2 chains in PDB entry 8ILR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLY 1050
B
 ASN 323LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8ILR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 51Right-handed alpha
Helix 2
AA2
A
88 93Right-handed 310
Helix 3
AA3
A
109 122Right-handed alpha
Helix 4
AA4
A
125 130Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
158 167Right-handed alpha
Helix 8
AA8
A
178 184Right-handed alpha
Helix 9
AA9
A
199 203Right-handed 310
Helix 10
AB1
A
216 227Right-handed alpha
Helix 11
AB2
A
266 269Right-handed 310
Helix 12
AB3
A
270 279Right-handed alpha
Helix 13
AB4
A
289 297Right-handed alpha
Helix 14
AB5
A
305 310Right-handed 310
Helix 15
AB6
A
328 330Right-handed 310
Helix 16
AB7
A
394 396Right-handed 310
Helix 17
AB8
A
488 496Right-handed alpha
Helix 18
AB9
A
528 537Right-handed alpha
Helix 19
AC1
A
544 554Right-handed alpha
Helix 20
AC2
A
555 559Right-handed 310
Helix 21
AC3
A
561 563Right-handed 310
Helix 22
AC4
A
564 569Right-handed alpha
Helix 23
AC5
A
576 589Right-handed alpha
Helix 24
AC6
A
594 599Right-handed alpha
Helix 25
AC7
A
600 603Right-handed 310
Helix 26
AC8
A
608 623Right-handed alpha
Helix 27
AC9
A
624 639Right-handed alpha
Helix 28
AD1
A
648 658Right-handed alpha
Helix 29
AD2
A
660 674Right-handed alpha
Helix 30
AD3
A
680 695Right-handed alpha
Helix 31
AD4
A
697 720Right-handed alpha
Helix 32
AD5
A
727 738Right-handed alpha
Helix 33
AD6
A
741 748Right-handed alpha
Helix 34
AD7
A
765 769Right-handed 310
Helix 35
AD8
A
807 828Right-handed alpha
Helix 36
AD9
A
857 864Right-handed alpha
Helix 37
AE1
A
875 885Right-handed alpha
Helix 38
AE2
A
888 912Right-handed alpha
Helix 39
AE3
A
957 965Right-handed alpha
Helix 40
AE4
A
974 993Right-handed alpha
Helix 41
AE5
A
994 1004Right-handed alpha
Helix 42
AE6
A
1005 1009Right-handed 310
Helix 43
AE7
A
1015 1026Right-handed alpha
Helix 44
AE8
A
1031 1048Right-handed alpha
Helix 45
AE9
B
327 331Right-handed 310
Helix 46
AF1
B
339 348Right-handed alpha
Helix 47
AF2
B
400 410Right-handed alpha
Helix 48
AF3
B
412 416Right-handed 310
Helix 49
AF4
B
431 435Right-handed 310
Helix 50
AF5
B
441 505Right-handed alpha
Helix 51
AF6
B
507 515Right-handed alpha
Helix 52
AF7
B
517 587Right-handed alpha
Helix 53
AF8
B
590 598Right-handed alpha
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There are 11 sheets in PDB entry 8ILR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 100parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 288parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
483 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
376 377anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 409anti-parallel
Strand 4
A
419 428anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 782anti-parallel
Strand 3
A
798 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 358first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
377 381anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
B
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il