Analysis of interatomic Contacts of Structural Units in PDB entry:
8IM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IM3 entry

There are 6 chains in PDB entry 8IM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 7	LEU 377
B	LYS 7	ARG 378
C	LYS 7	GLY 379
D	LYS 7	LEU 377
E	LYS 7	GLN 375
F	LYS 7	LEU 377

There are 73 helices in PDB entry 8IM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	41	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	79	90	Right-handed alpha
Helix 4	AA4	A	102	114	Right-handed alpha
Helix 5	AA5	A	169	173	Right-handed 310
Helix 6	AA6	A	192	205	Right-handed alpha
Helix 7	AA7	A	218	223	Right-handed alpha
Helix 8	AA8	A	250	260	Right-handed alpha
Helix 9	AA9	A	273	285	Right-handed alpha
Helix 10	AB1	A	293	306	Right-handed alpha
Helix 11	AB2	A	313	321	Right-handed alpha
Helix 12	AB3	A	361	377	Right-handed alpha
Helix 13	AB4	B	28	41	Right-handed alpha
Helix 14	AB5	B	49	53	Right-handed 310
Helix 15	AB6	B	79	90	Right-handed alpha
Helix 16	AB7	B	102	114	Right-handed alpha
Helix 17	AB8	B	169	173	Right-handed 310
Helix 18	AB9	B	192	204	Right-handed alpha
Helix 19	AC1	B	211	216	Right-handed alpha
Helix 20	AC2	B	218	223	Right-handed alpha
Helix 21	AC3	B	250	260	Right-handed alpha
Helix 22	AC4	B	273	285	Right-handed alpha
Helix 23	AC5	B	293	306	Right-handed alpha
Helix 24	AC6	B	313	321	Right-handed alpha
Helix 25	AC7	B	361	376	Right-handed alpha
Helix 26	AC8	C	28	41	Right-handed alpha
Helix 27	AC9	C	79	90	Right-handed alpha
Helix 28	AD1	C	102	114	Right-handed alpha
Helix 29	AD2	C	169	173	Right-handed 310
Helix 30	AD3	C	192	205	Right-handed alpha
Helix 31	AD4	C	218	223	Right-handed alpha
Helix 32	AD5	C	250	260	Right-handed alpha
Helix 33	AD6	C	273	285	Right-handed alpha
Helix 34	AD7	C	293	304	Right-handed alpha
Helix 35	AD8	C	313	321	Right-handed alpha
Helix 36	AD9	C	362	377	Right-handed alpha
Helix 37	AE1	D	28	41	Right-handed alpha
Helix 38	AE2	D	49	53	Right-handed 310
Helix 39	AE3	D	79	90	Right-handed alpha
Helix 40	AE4	D	102	113	Right-handed alpha
Helix 41	AE5	D	169	173	Right-handed 310
Helix 42	AE6	D	192	204	Right-handed alpha
Helix 43	AE7	D	218	223	Right-handed alpha
Helix 44	AE8	D	250	260	Right-handed alpha
Helix 45	AE9	D	273	285	Right-handed alpha
Helix 46	AF1	D	293	303	Right-handed alpha
Helix 47	AF2	D	313	321	Right-handed alpha
Helix 48	AF3	D	361	376	Right-handed alpha
Helix 49	AF4	E	28	41	Right-handed alpha
Helix 50	AF5	E	49	53	Right-handed 310
Helix 51	AF6	E	79	89	Right-handed alpha
Helix 52	AF7	E	102	114	Right-handed alpha
Helix 53	AF8	E	169	173	Right-handed 310
Helix 54	AF9	E	192	205	Right-handed alpha
Helix 55	AG1	E	211	216	Right-handed 310
Helix 56	AG2	E	218	223	Right-handed alpha
Helix 57	AG3	E	250	260	Right-handed alpha
Helix 58	AG4	E	273	285	Right-handed alpha
Helix 59	AG5	E	292	306	Right-handed alpha
Helix 60	AG6	E	313	321	Right-handed alpha
Helix 61	AG7	E	361	375	Right-handed alpha
Helix 62	AG8	F	28	41	Right-handed alpha
Helix 63	AG9	F	49	53	Right-handed 310
Helix 64	AH1	F	80	89	Right-handed alpha
Helix 65	AH2	F	102	112	Right-handed alpha
Helix 66	AH3	F	169	173	Right-handed 310
Helix 67	AH4	F	192	204	Right-handed alpha
Helix 68	AH5	F	218	223	Right-handed alpha
Helix 69	AH6	F	250	260	Right-handed alpha
Helix 70	AH7	F	273	285	Right-handed alpha
Helix 71	AH8	F	293	303	Right-handed alpha
Helix 72	AH9	F	313	321	Right-handed alpha
Helix 73	AI1	F	362	377	Right-handed alpha

There are 13 sheets in PDB entry 8IM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	57	64	anti-parallel
Strand 3	A	67	74	anti-parallel
Strand 4	A	15	25	parallel
Strand 5	A	92	101	anti-parallel
Strand 6	A	143	150	parallel
Strand 7	A	129	137	anti-parallel
Strand 8	A	117	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	263	271	anti-parallel
Strand 3	A	185	187	anti-parallel
Strand 4	A	237	243	parallel
Strand 5	A	224	230	anti-parallel
Strand 6	A	207	209	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	263	271	anti-parallel
Strand 3	A	347	354	parallel
Strand 4	A	331	336	anti-parallel
Strand 5	A	323	326	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	57	64	anti-parallel
Strand 3	B	67	74	anti-parallel
Strand 4	B	15	25	parallel
Strand 5	B	92	101	anti-parallel
Strand 6	B	143	150	parallel
Strand 7	B	129	137	anti-parallel
Strand 8	B	117	126	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	237	243	anti-parallel
Strand 4	B	178	187	parallel
Strand 5	B	263	271	anti-parallel
Strand 6	B	347	354	parallel
Strand 7	B	331	336	anti-parallel
Strand 8	B	323	326	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	57	64	anti-parallel
Strand 3	C	67	74	anti-parallel
Strand 4	C	15	25	parallel
Strand 5	C	92	101	anti-parallel
Strand 6	C	143	150	parallel
Strand 7	C	129	137	anti-parallel
Strand 8	C	117	126	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	224	230	anti-parallel
Strand 3	C	237	243	anti-parallel
Strand 4	C	180	187	parallel
Strand 5	C	263	270	anti-parallel
Strand 6	C	347	354	parallel
Strand 7	C	331	336	anti-parallel
Strand 8	C	323	326	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	57	64	anti-parallel
Strand 3	D	67	74	anti-parallel
Strand 4	D	15	25	parallel
Strand 5	D	92	101	anti-parallel
Strand 6	D	143	150	parallel
Strand 7	D	129	137	anti-parallel
Strand 8	D	117	126	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	224	230	anti-parallel
Strand 3	D	237	243	anti-parallel
Strand 4	D	178	187	parallel
Strand 5	D	263	271	anti-parallel
Strand 6	D	347	354	parallel
Strand 7	D	331	336	anti-parallel
Strand 8	D	323	326	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	48	first strand
Strand 2	E	57	64	anti-parallel
Strand 3	E	67	74	anti-parallel
Strand 4	E	15	25	parallel
Strand 5	E	92	101	anti-parallel
Strand 6	E	143	150	parallel
Strand 7	E	129	137	anti-parallel
Strand 8	E	117	126	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	224	230	anti-parallel
Strand 3	E	237	243	anti-parallel
Strand 4	E	181	187	parallel
Strand 5	E	263	270	anti-parallel
Strand 6	E	347	354	parallel
Strand 7	E	331	336	anti-parallel
Strand 8	E	323	326	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	57	64	anti-parallel
Strand 3	F	67	74	anti-parallel
Strand 4	F	15	25	parallel
Strand 5	F	92	101	anti-parallel
Strand 6	F	143	150	parallel
Strand 7	F	129	137	anti-parallel
Strand 8	F	117	126	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	209	first strand
Strand 2	F	224	230	anti-parallel
Strand 3	F	237	243	anti-parallel
Strand 4	F	178	187	parallel
Strand 5	F	263	271	anti-parallel
Strand 6	F	347	354	parallel
Strand 7	F	331	336	anti-parallel
Strand 8	F	323	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IM3