Analysis of interatomic Contacts of Structural Units in PDB entry:
8IM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IM8 entry

There are 3 chains in PDB entry 8IM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 120	GLN 676
B	GLU 120	GLN 676
C	GLU 120	LYS 264

There are103 helices in PDB entry 8IM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	164	168	Right-handed 310
Helix 2	AA2	A	185	188	Right-handed 310
Helix 3	AA3	A	195	199	Right-handed 310
Helix 4	AA4	A	203	207	Right-handed 310
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	227	234	Right-handed alpha
Helix 7	AA7	A	234	241	Right-handed alpha
Helix 8	AA8	A	289	302	Right-handed alpha
Helix 9	AA9	A	320	328	Right-handed alpha
Helix 10	AB1	A	336	343	Right-handed alpha
Helix 11	AB2	A	346	350	Right-handed 310
Helix 12	AB3	A	359	365	Right-handed 310
Helix 13	AB4	A	369	374	Right-handed alpha
Helix 14	AB5	A	418	424	Right-handed 310
Helix 15	AB6	A	436	453	Right-handed alpha
Helix 16	AB7	A	461	465	Right-handed 310
Helix 17	AB8	A	466	488	Right-handed alpha
Helix 18	AB9	A	512	518	Right-handed 310
Helix 19	AC1	A	526	534	Right-handed alpha
Helix 20	AC2	A	537	540	Right-handed 310
Helix 21	AC3	A	541	552	Right-handed alpha
Helix 22	AC4	A	574	582	Right-handed alpha
Helix 23	AC5	A	592	596	Right-handed 310
Helix 24	AC6	A	607	612	Right-handed 310
Helix 25	AC7	A	615	621	Right-handed alpha
Helix 26	AC8	A	623	640	Right-handed alpha
Helix 27	AC9	A	641	646	Right-handed alpha
Helix 28	AD1	B	195	199	Right-handed 310
Helix 29	AD2	B	203	207	Right-handed 310
Helix 30	AD3	B	208	212	Right-handed 310
Helix 31	AD4	B	227	233	Right-handed alpha
Helix 32	AD5	B	234	241	Right-handed alpha
Helix 33	AD6	B	289	303	Right-handed alpha
Helix 34	AD7	B	320	328	Right-handed alpha
Helix 35	AD8	B	337	344	Right-handed alpha
Helix 36	AD9	B	346	350	Right-handed 310
Helix 37	AE1	B	359	365	Right-handed 310
Helix 38	AE2	B	369	375	Right-handed alpha
Helix 39	AE3	B	418	424	Right-handed 310
Helix 40	AE4	B	436	453	Right-handed alpha
Helix 41	AE5	B	461	465	Right-handed 310
Helix 42	AE6	B	466	488	Right-handed alpha
Helix 43	AE7	B	512	517	Right-handed alpha
Helix 44	AE8	B	526	534	Right-handed alpha
Helix 45	AE9	B	537	540	Right-handed 310
Helix 46	AF1	B	541	552	Right-handed alpha
Helix 47	AF2	B	574	582	Right-handed alpha
Helix 48	AF3	B	607	612	Right-handed 310
Helix 49	AF4	B	615	620	Right-handed alpha
Helix 50	AF5	B	623	639	Right-handed alpha
Helix 51	AF6	B	641	646	Right-handed alpha
Helix 52	AF7	C	185	188	Right-handed 310
Helix 53	AF8	C	195	199	Right-handed 310
Helix 54	AF9	C	203	207	Right-handed 310
Helix 55	AG1	C	208	212	Right-handed 310
Helix 56	AG2	C	227	234	Right-handed alpha
Helix 57	AG3	C	234	241	Right-handed alpha
Helix 58	AG4	C	289	303	Right-handed alpha
Helix 59	AG5	C	320	328	Right-handed alpha
Helix 60	AG6	C	337	344	Right-handed alpha
Helix 61	AG7	C	346	350	Right-handed 310
Helix 62	AG8	C	357	365	Right-handed 310
Helix 63	AG9	C	369	374	Right-handed alpha
Helix 64	AH1	C	400	404	Right-handed 310
Helix 65	AH2	C	418	424	Right-handed 310
Helix 66	AH3	C	436	453	Right-handed alpha
Helix 67	AH4	C	461	465	Right-handed 310
Helix 68	AH5	C	466	488	Right-handed alpha
Helix 69	AH6	C	514	518	Right-handed 310
Helix 70	AH7	C	526	534	Right-handed alpha
Helix 71	AH8	C	537	539	Right-handed 310
Helix 72	AH9	C	540	552	Right-handed alpha
Helix 73	AI1	C	575	582	Right-handed alpha
Helix 74	AI2	C	607	612	Right-handed 310
Helix 75	AI3	C	615	621	Right-handed alpha
Helix 76	AI4	C	623	640	Right-handed alpha
Helix 77	AI5	C	641	646	Right-handed alpha
Helix 78	AI6	D	185	188	Right-handed 310
Helix 79	AI7	D	195	199	Right-handed 310
Helix 80	AI8	D	203	207	Right-handed 310
Helix 81	AI9	D	208	212	Right-handed 310
Helix 82	AJ1	D	227	233	Right-handed alpha
Helix 83	AJ2	D	234	241	Right-handed alpha
Helix 84	AJ3	D	289	303	Right-handed alpha
Helix 85	AJ4	D	320	328	Right-handed alpha
Helix 86	AJ5	D	336	342	Right-handed alpha
Helix 87	AJ6	D	346	350	Right-handed 310
Helix 88	AJ7	D	359	365	Right-handed 310
Helix 89	AJ8	D	369	375	Right-handed alpha
Helix 90	AJ9	D	400	404	Right-handed 310
Helix 91	AK1	D	418	424	Right-handed 310
Helix 92	AK2	D	436	453	Right-handed alpha
Helix 93	AK3	D	461	465	Right-handed 310
Helix 94	AK4	D	466	487	Right-handed alpha
Helix 95	AK5	D	512	517	Right-handed 310
Helix 96	AK6	D	526	534	Right-handed alpha
Helix 97	AK7	D	541	552	Right-handed alpha
Helix 98	AK8	D	574	582	Right-handed alpha
Helix 99	AK9	D	592	596	Right-handed 310
Helix 100	AL1	D	607	612	Right-handed 310
Helix 101	AL2	D	615	620	Right-handed alpha
Helix 102	AL3	D	623	640	Right-handed alpha
Helix 103	AL4	D	640	646	Right-handed alpha

There are 23 sheets in PDB entry 8IM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	158	161	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	170	175	anti-parallel
Strand 4	A	666	672	anti-parallel
Strand 5	A	657	663	anti-parallel
Strand 6	A	647	650	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	194	first strand
Strand 2	A	245	248	parallel
Strand 3	A	306	311	parallel
Strand 4	A	456	459	parallel
Strand 5	A	499	502	parallel
Strand 6	A	521	524	parallel
Strand 7	A	556	560	parallel
Strand 8	A	586	590	parallel
Strand 9	A	190	194	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	277	283	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	267	269	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	406	407	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	158	161	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	142	145	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	666	672	anti-parallel
Strand 5	B	657	663	anti-parallel
Strand 6	B	647	650	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	194	first strand
Strand 2	B	245	248	parallel
Strand 3	B	306	311	parallel
Strand 4	B	456	459	parallel
Strand 5	B	499	502	parallel
Strand 6	B	521	524	parallel
Strand 7	B	556	560	parallel
Strand 8	B	586	590	parallel
Strand 9	B	190	194	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	277	283	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	268	269	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	158	161	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	170	175	anti-parallel
Strand 4	C	666	672	anti-parallel
Strand 5	C	657	663	anti-parallel
Strand 6	C	647	650	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	194	first strand
Strand 2	C	245	248	parallel
Strand 3	C	306	311	parallel
Strand 4	C	456	459	parallel
Strand 5	C	499	502	parallel
Strand 6	C	521	524	parallel
Strand 7	C	556	560	parallel
Strand 8	C	586	590	parallel
Strand 9	C	190	194	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	277	283	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	267	269	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	383	first strand
Strand 2	C	406	407	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	158	161	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	142	145	anti-parallel
Strand 3	D	170	175	anti-parallel
Strand 4	D	666	672	anti-parallel
Strand 5	D	657	663	anti-parallel
Strand 6	D	647	650	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	194	first strand
Strand 2	D	245	248	parallel
Strand 3	D	306	311	parallel
Strand 4	D	456	459	parallel
Strand 5	D	499	502	parallel
Strand 6	D	521	523	parallel
Strand 7	D	556	560	parallel
Strand 8	D	586	590	parallel
Strand 9	D	190	194	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	277	283	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	267	269	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	383	first strand
Strand 2	D	406	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IM8