Analysis of interatomic Contacts of Structural Units in PDB entry:
8IMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IMY entry

There are 6 chains in PDB entry 8IMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ARG 10	LYS 621
K	GLY 41	GLY 387
U	ALA 2	LEU 420
T	PRO 25	GLU 554
S	ALA 2	THR 544
D	PRO 212	ILE 246

There are 87 helices in PDB entry 8IMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	10	20	Right-handed alpha
Helix 2	AA2	G	20	38	Right-handed alpha
Helix 3	AA3	G	39	41	Right-handed 310
Helix 4	AA4	G	52	57	Right-handed alpha
Helix 5	AA5	G	69	85	Right-handed alpha
Helix 6	AA6	G	88	99	Right-handed alpha
Helix 7	AA7	G	156	172	Right-handed alpha
Helix 8	AA8	G	188	200	Right-handed alpha
Helix 9	AA9	G	241	245	Right-handed 310
Helix 10	AB1	G	248	262	Right-handed alpha
Helix 11	AB2	G	282	300	Right-handed alpha
Helix 12	AB3	G	305	311	Right-handed alpha
Helix 13	AB4	G	332	348	Right-handed alpha
Helix 14	AB5	G	371	375	Right-handed alpha
Helix 15	AB6	G	375	398	Right-handed alpha
Helix 16	AB7	G	424	444	Right-handed alpha
Helix 17	AB8	G	448	456	Right-handed alpha
Helix 18	AB9	G	459	477	Right-handed alpha
Helix 19	AC1	G	478	483	Right-handed alpha
Helix 20	AC2	G	492	517	Right-handed alpha
Helix 21	AC3	G	517	535	Right-handed alpha
Helix 22	AC4	G	540	550	Right-handed alpha
Helix 23	AC5	G	552	568	Right-handed alpha
Helix 24	AC6	G	573	596	Right-handed alpha
Helix 25	AC7	G	598	606	Right-handed alpha
Helix 26	AC8	G	606	619	Right-handed alpha
Helix 27	AC9	K	58	76	Right-handed alpha
Helix 28	AD1	K	78	80	Right-handed 310
Helix 29	AD2	K	127	137	Right-handed alpha
Helix 30	AD3	K	180	193	Right-handed alpha
Helix 31	AD4	K	207	211	Right-handed 310
Helix 32	AD5	K	248	258	Right-handed alpha
Helix 33	AD6	K	267	273	Right-handed alpha
Helix 34	AD7	K	294	299	Right-handed 310
Helix 35	AD8	K	300	305	Right-handed alpha
Helix 36	AD9	K	350	358	Right-handed alpha
Helix 37	AE1	K	367	387	Right-handed alpha
Helix 38	AE2	U	3	21	Right-handed alpha
Helix 39	AE3	U	23	29	Right-handed alpha
Helix 40	AE4	U	40	54	Right-handed alpha
Helix 41	AE5	U	66	76	Right-handed alpha
Helix 42	AE6	U	79	116	Right-handed alpha
Helix 43	AE7	U	135	146	Right-handed alpha
Helix 44	AE8	U	147	156	Right-handed alpha
Helix 45	AE9	U	159	176	Right-handed alpha
Helix 46	AF1	U	178	193	Right-handed alpha
Helix 47	AF2	U	199	211	Right-handed alpha
Helix 48	AF3	U	220	249	Right-handed alpha
Helix 49	AF4	U	252	264	Right-handed alpha
Helix 50	AF5	U	273	278	Right-handed alpha
Helix 51	AF6	U	285	300	Right-handed alpha
Helix 52	AF7	U	300	308	Right-handed alpha
Helix 53	AF8	U	311	327	Right-handed alpha
Helix 54	AF9	U	331	340	Right-handed alpha
Helix 55	AG1	U	341	346	Right-handed alpha
Helix 56	AG2	U	347	352	Right-handed 310
Helix 57	AG3	U	354	378	Right-handed alpha
Helix 58	AG4	U	384	419	Right-handed alpha
Helix 59	AG5	T	70	80	Right-handed alpha
Helix 60	AG6	T	95	100	Right-handed alpha
Helix 61	AG7	T	122	139	Right-handed alpha
Helix 62	AG8	T	141	145	Right-handed 310
Helix 63	AG9	T	167	169	Right-handed 310
Helix 64	AH1	T	182	192	Right-handed alpha
Helix 65	AH2	T	199	205	Right-handed 310
Helix 66	AH3	T	206	212	Right-handed alpha
Helix 67	AH4	T	260	264	Right-handed alpha
Helix 68	AH5	T	459	463	Right-handed 310
Helix 69	AH6	T	490	494	Right-handed 310
Helix 70	AH7	T	526	549	Right-handed alpha
Helix 71	AH8	S	3	39	Right-handed alpha
Helix 72	AH9	S	47	55	Right-handed alpha
Helix 73	AI1	S	124	132	Right-handed alpha
Helix 74	AI2	S	180	194	Right-handed alpha
Helix 75	AI3	S	196	204	Right-handed alpha
Helix 76	AI4	S	246	263	Right-handed alpha
Helix 77	AI5	S	300	312	Right-handed alpha
Helix 78	AI6	S	330	334	Right-handed 310
Helix 79	AI7	S	365	369	Right-handed 310
Helix 80	AI8	S	381	396	Right-handed alpha
Helix 81	AI9	S	419	452	Right-handed alpha
Helix 82	AJ1	S	458	482	Right-handed alpha
Helix 83	AJ2	S	483	503	Right-handed alpha
Helix 84	AJ3	S	504	508	Right-handed 310
Helix 85	AJ4	S	514	517	Right-handed 310
Helix 86	AJ5	S	518	544	Right-handed alpha
Helix 87	AJ6	D	226	242	Right-handed alpha

There are 17 sheets in PDB entry 8IMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	367	370	anti-parallel
Strand 3	G	360	361	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	209	first strand
Strand 2	G	102	116	anti-parallel
Strand 3	G	121	133	anti-parallel
Strand 4	G	179	184	anti-parallel
Strand 5	G	142	147	parallel
Strand 6	G	218	225	parallel
Strand 7	G	315	322	parallel
Strand 8	G	234	238	anti-parallel
Strand 9	G	266	268	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	231	232	first strand
Strand 2	G	330	331	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	86	first strand
Strand 2	K	44	52	parallel
Strand 3	K	155	166	parallel
Strand 4	K	169	172	anti-parallel
Strand 5	K	176	179	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	86	first strand
Strand 2	K	44	52	parallel
Strand 3	K	155	166	parallel
Strand 4	K	199	204	parallel
Strand 5	K	220	224	parallel
Strand 6	K	285	287	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	234	238	first strand
Strand 2	K	243	247	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	311	312	first strand
Strand 2	S	350	353	anti-parallel
Strand 3	S	357	360	anti-parallel
Strand 4	S	321	327	parallel
Strand 5	S	226	235	parallel
Strand 6	S	267	276	parallel
Strand 7	T	65	66	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	150	151	first strand
Strand 2	T	171	176	anti-parallel
Strand 3	T	109	116	anti-parallel
Strand 4	T	82	91	anti-parallel
Strand 5	T	216	226	anti-parallel
Strand 6	T	234	245	anti-parallel
Strand 7	T	44	54	anti-parallel
Strand 8	T	28	38	anti-parallel
Strand 9	T	275	282	parallel
Strand 10	T	318	319	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	258	259	first strand
Strand 2	T	335	336	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	305	307	first strand
Strand 2	T	312	314	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	352	359	first strand
Strand 2	T	365	374	anti-parallel
Strand 3	T	438	447	anti-parallel
Strand 4	T	394	404	anti-parallel
Strand 5	T	407	408	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	413	417	first strand
Strand 2	T	426	434	anti-parallel
Strand 3	T	381	389	anti-parallel
Strand 4	T	470	476	anti-parallel
Strand 5	T	503	509	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	464	466	first strand
Strand 2	T	513	515	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	85	88	first strand
Strand 2	S	100	108	anti-parallel
Strand 3	S	91	92	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	85	88	first strand
Strand 2	S	100	108	anti-parallel
Strand 3	S	59	68	parallel
Strand 4	S	142	147	parallel
Strand 5	S	167	171	parallel
Strand 6	S	161	163	anti-parallel
Strand 7	S	409	410	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	241	244	first strand
Strand 2	S	376	379	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	285	287	first strand
Strand 2	S	292	295	anti-parallel
Strand 3	S	336	338	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IMY