Analysis of interatomic Contacts of Structural Units in PDB entry:
8IN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IN8 entry

There are 4 chains in PDB entry 8IN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 327	GLY 584
C	ASN 4	MET 473
I	A 1	U 24
J	A -3	A 19

There are 25 helices in PDB entry 8IN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	356	367	Right-handed alpha
Helix 2	AA2	B	383	391	Right-handed alpha
Helix 3	AA3	B	406	414	Right-handed alpha
Helix 4	AA4	B	414	430	Right-handed alpha
Helix 5	AA5	B	456	458	Right-handed 310
Helix 6	AA6	B	459	466	Right-handed alpha
Helix 7	AA7	B	513	519	Right-handed 310
Helix 8	AA8	B	520	529	Right-handed alpha
Helix 9	AA9	B	532	549	Right-handed alpha
Helix 10	AB1	C	29	37	Right-handed alpha
Helix 11	AB2	C	39	43	Right-handed 310
Helix 12	AB3	C	60	73	Right-handed alpha
Helix 13	AB4	C	89	95	Right-handed alpha
Helix 14	AB5	C	111	120	Right-handed alpha
Helix 15	AB6	C	121	134	Right-handed alpha
Helix 16	AB7	C	135	137	Right-handed 310
Helix 17	AB8	C	151	157	Right-handed 310
Helix 18	AB9	C	165	174	Right-handed alpha
Helix 19	AC1	C	184	190	Right-handed alpha
Helix 20	AC2	C	192	208	Right-handed alpha
Helix 21	AC3	C	276	295	Right-handed alpha
Helix 22	AC4	C	312	322	Right-handed alpha
Helix 23	AC5	C	418	430	Right-handed alpha
Helix 24	AC6	C	443	459	Right-handed alpha
Helix 25	AC7	C	470	473	Right-handed 310

There are 12 sheets in PDB entry 8IN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	581	first strand
Strand 2	B	330	332	anti-parallel
Strand 3	C	343	346	anti-parallel
Strand 4	C	355	356	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	501	512	anti-parallel
Strand 3	B	485	496	anti-parallel
Strand 4	B	443	447	anti-parallel
Strand 5	B	439	440	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	501	512	anti-parallel
Strand 3	B	485	496	anti-parallel
Strand 4	B	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	378	381	anti-parallel
Strand 3	B	343	349	anti-parallel
Strand 4	B	398	404	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	561	first strand
Strand 2	B	569	574	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	365	368	anti-parallel
Strand 3	C	373	376	anti-parallel
Strand 4	C	407	410	anti-parallel
Strand 5	C	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	19	21	anti-parallel
Strand 3	C	214	215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	52	56	parallel
Strand 3	C	145	149	parallel
Strand 4	C	180	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	224	233	parallel
Strand 3	C	239	249	anti-parallel
Strand 4	C	256	259	anti-parallel
Strand 5	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	303	first strand
Strand 2	C	328	329	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	394	395	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IN8