Analysis of interatomic Contacts of Structural Units in PDB entry:
8IN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IN9 entry

There are 2 chains in PDB entry 8IN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24GLU 919
B
 ASP 946LEU 1020
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 8IN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
103 109Right-handed alpha
Helix 3
AA3
A
111 129Right-handed alpha
Helix 4
AA4
A
131 136Right-handed 310
Helix 5
AA5
A
149 157Right-handed alpha
Helix 6
AA6
A
165 172Right-handed alpha
Helix 7
AA7
A
174 185Right-handed alpha
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
198 213Right-handed alpha
Helix 10
AB1
A
229 239Right-handed alpha
Helix 11
AB2
A
272 279Right-handed alpha
Helix 12
AB3
A
304 320Right-handed alpha
Helix 13
AB4
A
338 351Right-handed alpha
Helix 14
AB5
A
363 367Right-handed 310
Helix 15
AB6
A
371 373Right-handed 310
Helix 16
AB7
A
374 390Right-handed alpha
Helix 17
AB8
A
406 411Right-handed alpha
Helix 18
AB9
A
484 501Right-handed alpha
Helix 19
AC1
A
501 506Right-handed alpha
Helix 20
AC2
A
508 519Right-handed alpha
Helix 21
AC3
A
533 545Right-handed alpha
Helix 22
AC4
A
579 584Right-handed alpha
Helix 23
AC5
A
584 605Right-handed alpha
Helix 24
AC6
A
614 621Right-handed alpha
Helix 25
AC7
A
625 628Right-handed 310
Helix 26
AC8
A
629 651Right-handed alpha
Helix 27
AC9
A
663 672Right-handed alpha
Helix 28
AD1
A
676 693Right-handed alpha
Helix 29
AD2
A
706 715Right-handed alpha
Helix 30
AD3
A
738 749Right-handed alpha
Helix 31
AD4
A
766 771Right-handed 310
Helix 32
AD5
A
772 781Right-handed alpha
Helix 33
AD6
A
802 807Right-handed alpha
Helix 34
AD7
A
808 818Right-handed alpha
Helix 35
AD8
A
821 833Right-handed alpha
Helix 36
AD9
A
844 854Right-handed alpha
Helix 37
AE1
A
872 887Right-handed alpha
Helix 38
AE2
A
892 898Right-handed 310
Helix 39
AE3
B
948 960Right-handed alpha
Helix 40
AE4
B
963 967Right-handed 310
Helix 41
AE5
B
972 977Right-handed alpha
Helix 42
AE6
B
979 991Right-handed alpha
Helix 43
AE7
B
1001 1006Right-handed alpha
Helix 44
AE8
B
1008 1014Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8IN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
141 145parallel
Strand 3
A
219 225parallel
Strand 4
A
263 271anti-parallel
Strand 5
A
29 37anti-parallel
Strand 6
A
284 293anti-parallel
Strand 7
A
443 450anti-parallel
Strand 8
A
432 438anti-parallel
Strand 9
A
328 330parallel
Strand 10
A
359 362parallel
Strand 11
A
412 414parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
914 915anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 482first strand
Strand 2
A
525 531anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 793first strand
Strand 2
A
657 660parallel
Strand 3
A
561 566parallel
Strand 4
A
834 840parallel
Strand 5
A
862 864parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 728first strand
Strand 2
A
731 737anti-parallel
Strand 3
A
698 703anti-parallel
Strand 4
A
756 757anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il