Analysis of interatomic Contacts of Structural Units in PDB entry:
8INO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8INO entry

There is 1 chain in PDB entry 8INO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12LEU 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8INO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 39Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
83 86Right-handed 310
Helix 4
AA4
A
87 111Right-handed alpha
Helix 5
AA5
A
128 136Right-handed alpha
Helix 6
AA6
A
147 159Right-handed alpha
Helix 7
AA7
A
183 187Right-handed 310
Helix 8
AA8
A
190 195Right-handed 310
Helix 9
AA9
A
196 207Right-handed alpha
Helix 10
AB1
A
208 209Right-handed 310
Helix 11
AB2
A
210 214Right-handed 310
Helix 12
AB3
A
222 225Right-handed 310
Helix 13
AB4
A
226 235Right-handed alpha
Helix 14
AB5
A
273 283Right-handed alpha
Helix 15
AB6
A
301 316Right-handed alpha
Helix 16
AB7
A
324 331Right-handed 310
Helix 17
AB8
A
338 342Right-handed 310
Helix 18
AB9
A
351 357Right-handed alpha
Helix 19
AC1
A
369 379Right-handed alpha
Helix 20
AC2
A
391 402Right-handed alpha
Helix 21
AC3
A
419 432Right-handed alpha
Helix 22
AC4
A
433 455Right-handed alpha
Helix 23
AC5
A
458 471Right-handed alpha
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There are 2 sheets in PDB entry 8INO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
42 48parallel
Strand 3
A
14 18parallel
Strand 4
A
117 123parallel
Strand 5
A
139 144parallel
Strand 6
A
216 219parallel
Strand 7
A
239 241parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
318 322parallel
Strand 3
A
289 293parallel
Strand 4
A
361 366parallel
Strand 5
A
383 385parallel
Strand 6
A
406 408parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il