Analysis of interatomic Contacts of Structural Units in PDB entry:
8INP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8INP entry

There is 1 chain in PDB entry 8INP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLY 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8INP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 32Right-handed alpha
Helix 2
AA2
A
49 61Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
94 105Right-handed alpha
Helix 5
AA5
A
115 117Right-handed 310
Helix 6
AA6
A
118 126Right-handed alpha
Helix 7
AA7
A
137 153Right-handed alpha
Helix 8
AA8
A
157 162Right-handed alpha
Helix 9
AA9
A
177 179Right-handed 310
Helix 10
AB1
A
180 184Right-handed 310
Helix 11
AB2
A
188 201Right-handed alpha
Helix 12
AB3
A
202 204Right-handed 310
Helix 13
AB4
A
216 224Right-handed alpha
Helix 14
AB5
A
252 260Right-handed alpha
Helix 15
AB6
A
278 293Right-handed alpha
Helix 16
AB7
A
319 324Right-handed alpha
Helix 17
AB8
A
327 333Right-handed alpha
Helix 18
AB9
A
344 351Right-handed alpha
Helix 19
AC1
A
362 373Right-handed alpha
Helix 20
AC2
A
384 395Right-handed alpha
Helix 21
AC3
A
411 424Right-handed alpha
Helix 22
AC4
A
425 447Right-handed alpha
Helix 23
AC5
A
450 465Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8INP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
35 40parallel
Strand 3
A
7 11parallel
Strand 4
A
109 113parallel
Strand 5
A
130 134parallel
Strand 6
A
206 209parallel
Strand 7
A
231 233parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
174 175anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 340first strand
Strand 2
A
295 300parallel
Strand 3
A
266 270parallel
Strand 4
A
354 359parallel
Strand 5
A
376 378parallel
Strand 6
A
399 401parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il