Analysis of interatomic Contacts of Structural Units in PDB entry:
8IO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IO7 entry

There are 2 chains in PDB entry 8IO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASN 807
B	THR 2	ASN 807

There are 80 helices in PDB entry 8IO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	42	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	67	86	Right-handed alpha
Helix 4	AA4	A	98	110	Right-handed alpha
Helix 5	AA5	A	110	116	Right-handed alpha
Helix 6	AA6	A	122	133	Right-handed alpha
Helix 7	AA7	A	159	169	Right-handed alpha
Helix 8	AA8	A	183	186	Right-handed 310
Helix 9	AA9	A	187	194	Right-handed alpha
Helix 10	AB1	A	195	200	Right-handed 310
Helix 11	AB2	A	223	228	Right-handed alpha
Helix 12	AB3	A	229	239	Right-handed alpha
Helix 13	AB4	A	255	284	Right-handed alpha
Helix 14	AB5	A	316	320	Right-handed 310
Helix 15	AB6	A	330	343	Right-handed alpha
Helix 16	AB7	A	345	350	Right-handed alpha
Helix 17	AB8	A	357	361	Right-handed 310
Helix 18	AB9	A	366	370	Right-handed 310
Helix 19	AC1	A	378	383	Right-handed alpha
Helix 20	AC2	A	390	394	Right-handed 310
Helix 21	AC3	A	397	403	Right-handed alpha
Helix 22	AC4	A	411	426	Right-handed alpha
Helix 23	AC5	A	443	449	Right-handed 310
Helix 24	AC6	A	478	492	Right-handed alpha
Helix 25	AC7	A	503	507	Right-handed 310
Helix 26	AC8	A	508	526	Right-handed alpha
Helix 27	AC9	A	542	546	Right-handed 310
Helix 28	AD1	A	550	554	Right-handed 310
Helix 29	AD2	A	557	564	Right-handed alpha
Helix 30	AD3	A	580	594	Right-handed alpha
Helix 31	AD4	A	613	624	Right-handed alpha
Helix 32	AD5	A	648	664	Right-handed alpha
Helix 33	AD6	A	676	681	Right-handed 310
Helix 34	AD7	A	691	699	Right-handed alpha
Helix 35	AD8	A	712	718	Right-handed alpha
Helix 36	AD9	A	725	727	Right-handed 310
Helix 37	AE1	A	742	750	Right-handed alpha
Helix 38	AE2	A	753	764	Right-handed alpha
Helix 39	AE3	A	770	792	Right-handed alpha
Helix 40	AE4	A	795	801	Right-handed alpha
Helix 41	AE5	B	18	42	Right-handed alpha
Helix 42	AE6	B	53	57	Right-handed 310
Helix 43	AE7	B	67	86	Right-handed alpha
Helix 44	AE8	B	98	110	Right-handed alpha
Helix 45	AE9	B	110	116	Right-handed alpha
Helix 46	AF1	B	122	133	Right-handed alpha
Helix 47	AF2	B	159	169	Right-handed alpha
Helix 48	AF3	B	183	186	Right-handed 310
Helix 49	AF4	B	187	194	Right-handed alpha
Helix 50	AF5	B	195	200	Right-handed 310
Helix 51	AF6	B	223	228	Right-handed alpha
Helix 52	AF7	B	229	239	Right-handed alpha
Helix 53	AF8	B	255	284	Right-handed alpha
Helix 54	AF9	B	316	320	Right-handed 310
Helix 55	AG1	B	330	343	Right-handed alpha
Helix 56	AG2	B	345	350	Right-handed alpha
Helix 57	AG3	B	357	361	Right-handed 310
Helix 58	AG4	B	366	370	Right-handed 310
Helix 59	AG5	B	378	383	Right-handed alpha
Helix 60	AG6	B	390	394	Right-handed 310
Helix 61	AG7	B	397	403	Right-handed alpha
Helix 62	AG8	B	411	426	Right-handed alpha
Helix 63	AG9	B	443	449	Right-handed 310
Helix 64	AH1	B	478	492	Right-handed alpha
Helix 65	AH2	B	503	507	Right-handed 310
Helix 66	AH3	B	508	526	Right-handed alpha
Helix 67	AH4	B	542	546	Right-handed 310
Helix 68	AH5	B	550	554	Right-handed 310
Helix 69	AH6	B	557	564	Right-handed alpha
Helix 70	AH7	B	580	594	Right-handed alpha
Helix 71	AH8	B	613	624	Right-handed alpha
Helix 72	AH9	B	648	664	Right-handed alpha
Helix 73	AI1	B	676	681	Right-handed 310
Helix 74	AI2	B	691	699	Right-handed alpha
Helix 75	AI3	B	712	718	Right-handed alpha
Helix 76	AI4	B	725	727	Right-handed 310
Helix 77	AI5	B	742	750	Right-handed alpha
Helix 78	AI6	B	753	764	Right-handed alpha
Helix 79	AI7	B	770	792	Right-handed alpha
Helix 80	AI8	B	795	800	Right-handed alpha

There are 16 sheets in PDB entry 8IO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	174	181	parallel
Strand 3	A	92	93	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	174	181	parallel
Strand 3	A	207	214	parallel
Strand 4	A	291	297	parallel
Strand 5	A	242	248	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	221	222	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	311	312	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	410	first strand
Strand 2	A	607	610	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	475	first strand
Strand 2	A	430	434	parallel
Strand 3	A	495	501	parallel
Strand 4	A	535	540	parallel
Strand 5	A	598	602	parallel
Strand 6	A	573	577	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	467	468	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	627	first strand
Strand 2	A	669	674	anti-parallel
Strand 3	A	642	647	parallel
Strand 4	A	705	709	parallel
Strand 5	A	729	732	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	174	181	parallel
Strand 3	B	92	93	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	174	181	parallel
Strand 3	B	207	214	parallel
Strand 4	B	291	297	parallel
Strand 5	B	242	248	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	221	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	311	312	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	410	first strand
Strand 2	B	607	610	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	475	first strand
Strand 2	B	430	434	parallel
Strand 3	B	495	501	parallel
Strand 4	B	535	540	parallel
Strand 5	B	598	602	parallel
Strand 6	B	573	577	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	467	468	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	625	627	first strand
Strand 2	B	669	674	anti-parallel
Strand 3	B	642	647	parallel
Strand 4	B	705	709	parallel
Strand 5	B	729	732	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IO7