Analysis of interatomic Contacts of Structural Units in PDB entry:
8IOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IOF entry

There are 4 chains in PDB entry 8IOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLY 793
B	LYS 3	GLY 793
C	SER 2	GLY 793
D	LYS 3	GLY 793

There are173 helices in PDB entry 8IOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	18	Right-handed alpha
Helix 2	AA2	A	25	37	Right-handed alpha
Helix 3	AA3	A	42	58	Right-handed alpha
Helix 4	AA4	A	82	93	Right-handed alpha
Helix 5	AA5	A	108	119	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed alpha
Helix 7	AA7	A	127	136	Right-handed alpha
Helix 8	AA8	A	137	146	Right-handed alpha
Helix 9	AA9	A	152	157	Right-handed alpha
Helix 10	AB1	A	165	188	Right-handed alpha
Helix 11	AB2	A	189	192	Right-handed 310
Helix 12	AB3	A	193	230	Right-handed alpha
Helix 13	AB4	A	233	250	Right-handed alpha
Helix 14	AB5	A	257	276	Right-handed alpha
Helix 15	AB6	A	285	290	Right-handed alpha
Helix 16	AB7	A	290	301	Right-handed alpha
Helix 17	AB8	A	304	321	Right-handed alpha
Helix 18	AB9	A	327	334	Right-handed alpha
Helix 19	AC1	A	357	371	Right-handed alpha
Helix 20	AC2	A	387	400	Right-handed alpha
Helix 21	AC3	A	410	420	Right-handed alpha
Helix 22	AC4	A	423	428	Right-handed alpha
Helix 23	AC5	A	455	464	Right-handed alpha
Helix 24	AC6	A	481	485	Right-handed 310
Helix 25	AC7	A	487	521	Right-handed alpha
Helix 26	AC8	A	523	528	Right-handed alpha
Helix 27	AC9	A	530	537	Right-handed alpha
Helix 28	AD1	A	539	543	Right-handed 310
Helix 29	AD2	A	557	573	Right-handed alpha
Helix 30	AD3	A	579	589	Right-handed alpha
Helix 31	AD4	A	594	604	Right-handed alpha
Helix 32	AD5	A	611	616	Right-handed alpha
Helix 33	AD6	A	617	631	Right-handed alpha
Helix 34	AD7	A	648	654	Right-handed alpha
Helix 35	AD8	A	683	692	Right-handed alpha
Helix 36	AD9	A	693	694	Right-handed 310
Helix 37	AE1	A	695	699	Right-handed 310
Helix 38	AE2	A	711	714	Right-handed 310
Helix 39	AE3	A	715	733	Right-handed alpha
Helix 40	AE4	A	744	754	Right-handed alpha
Helix 41	AE5	A	755	759	Right-handed 310
Helix 42	AE6	A	773	775	Right-handed 310
Helix 43	AE7	A	776	785	Right-handed alpha
Helix 44	AE8	B	5	18	Right-handed alpha
Helix 45	AE9	B	25	37	Right-handed alpha
Helix 46	AF1	B	42	58	Right-handed alpha
Helix 47	AF2	B	82	93	Right-handed alpha
Helix 48	AF3	B	96	100	Right-handed 310
Helix 49	AF4	B	108	119	Right-handed alpha
Helix 50	AF5	B	119	124	Right-handed alpha
Helix 51	AF6	B	127	136	Right-handed alpha
Helix 52	AF7	B	137	146	Right-handed alpha
Helix 53	AF8	B	152	157	Right-handed alpha
Helix 54	AF9	B	165	188	Right-handed alpha
Helix 55	AG1	B	189	192	Right-handed 310
Helix 56	AG2	B	193	230	Right-handed alpha
Helix 57	AG3	B	233	250	Right-handed alpha
Helix 58	AG4	B	257	276	Right-handed alpha
Helix 59	AG5	B	285	290	Right-handed alpha
Helix 60	AG6	B	290	300	Right-handed alpha
Helix 61	AG7	B	304	321	Right-handed alpha
Helix 62	AG8	B	327	334	Right-handed alpha
Helix 63	AG9	B	357	371	Right-handed alpha
Helix 64	AH1	B	387	400	Right-handed alpha
Helix 65	AH2	B	410	421	Right-handed alpha
Helix 66	AH3	B	423	428	Right-handed alpha
Helix 67	AH4	B	455	464	Right-handed alpha
Helix 68	AH5	B	481	485	Right-handed 310
Helix 69	AH6	B	487	521	Right-handed alpha
Helix 70	AH7	B	523	528	Right-handed alpha
Helix 71	AH8	B	530	537	Right-handed alpha
Helix 72	AH9	B	539	543	Right-handed 310
Helix 73	AI1	B	557	573	Right-handed alpha
Helix 74	AI2	B	579	589	Right-handed alpha
Helix 75	AI3	B	594	604	Right-handed alpha
Helix 76	AI4	B	611	616	Right-handed alpha
Helix 77	AI5	B	617	631	Right-handed alpha
Helix 78	AI6	B	648	654	Right-handed alpha
Helix 79	AI7	B	682	692	Right-handed alpha
Helix 80	AI8	B	693	694	Right-handed 310
Helix 81	AI9	B	695	699	Right-handed 310
Helix 82	AJ1	B	711	714	Right-handed 310
Helix 83	AJ2	B	715	733	Right-handed alpha
Helix 84	AJ3	B	744	754	Right-handed alpha
Helix 85	AJ4	B	755	759	Right-handed 310
Helix 86	AJ5	B	773	775	Right-handed 310
Helix 87	AJ6	B	776	785	Right-handed alpha
Helix 88	AJ7	C	5	18	Right-handed alpha
Helix 89	AJ8	C	25	37	Right-handed alpha
Helix 90	AJ9	C	42	58	Right-handed alpha
Helix 91	AK1	C	82	93	Right-handed alpha
Helix 92	AK2	C	96	100	Right-handed 310
Helix 93	AK3	C	108	119	Right-handed alpha
Helix 94	AK4	C	119	124	Right-handed alpha
Helix 95	AK5	C	127	136	Right-handed alpha
Helix 96	AK6	C	137	146	Right-handed alpha
Helix 97	AK7	C	152	157	Right-handed alpha
Helix 98	AK8	C	165	188	Right-handed alpha
Helix 99	AK9	C	189	192	Right-handed 310
Helix 100	AL1	C	193	230	Right-handed alpha
Helix 101	AL2	C	233	250	Right-handed alpha
Helix 102	AL3	C	257	276	Right-handed alpha
Helix 103	AL4	C	285	290	Right-handed alpha
Helix 104	AL5	C	290	300	Right-handed alpha
Helix 105	AL6	C	304	321	Right-handed alpha
Helix 106	AL7	C	327	334	Right-handed alpha
Helix 107	AL8	C	357	371	Right-handed alpha
Helix 108	AL9	C	387	400	Right-handed alpha
Helix 109	AM1	C	410	419	Right-handed alpha
Helix 110	AM2	C	423	428	Right-handed alpha
Helix 111	AM3	C	455	464	Right-handed alpha
Helix 112	AM4	C	481	485	Right-handed 310
Helix 113	AM5	C	487	521	Right-handed alpha
Helix 114	AM6	C	523	528	Right-handed alpha
Helix 115	AM7	C	530	537	Right-handed alpha
Helix 116	AM8	C	539	543	Right-handed 310
Helix 117	AM9	C	557	573	Right-handed alpha
Helix 118	AN1	C	579	589	Right-handed alpha
Helix 119	AN2	C	594	604	Right-handed alpha
Helix 120	AN3	C	611	616	Right-handed alpha
Helix 121	AN4	C	617	631	Right-handed alpha
Helix 122	AN5	C	652	656	Right-handed 310
Helix 123	AN6	C	682	692	Right-handed alpha
Helix 124	AN7	C	693	694	Right-handed 310
Helix 125	AN8	C	695	699	Right-handed 310
Helix 126	AN9	C	710	715	Right-handed alpha
Helix 127	AO1	C	715	733	Right-handed alpha
Helix 128	AO2	C	744	754	Right-handed alpha
Helix 129	AO3	C	755	759	Right-handed 310
Helix 130	AO4	C	773	775	Right-handed 310
Helix 131	AO5	C	776	785	Right-handed alpha
Helix 132	AO6	D	5	18	Right-handed alpha
Helix 133	AO7	D	25	37	Right-handed alpha
Helix 134	AO8	D	42	58	Right-handed alpha
Helix 135	AO9	D	82	93	Right-handed alpha
Helix 136	AP1	D	96	100	Right-handed 310
Helix 137	AP2	D	108	119	Right-handed alpha
Helix 138	AP3	D	119	124	Right-handed alpha
Helix 139	AP4	D	127	136	Right-handed alpha
Helix 140	AP5	D	137	145	Right-handed alpha
Helix 141	AP6	D	152	157	Right-handed alpha
Helix 142	AP7	D	165	187	Right-handed alpha
Helix 143	AP8	D	193	230	Right-handed alpha
Helix 144	AP9	D	233	250	Right-handed alpha
Helix 145	AQ1	D	257	276	Right-handed alpha
Helix 146	AQ2	D	285	290	Right-handed alpha
Helix 147	AQ3	D	290	300	Right-handed alpha
Helix 148	AQ4	D	304	321	Right-handed alpha
Helix 149	AQ5	D	327	334	Right-handed alpha
Helix 150	AQ6	D	357	371	Right-handed alpha
Helix 151	AQ7	D	387	400	Right-handed alpha
Helix 152	AQ8	D	410	420	Right-handed alpha
Helix 153	AQ9	D	423	428	Right-handed alpha
Helix 154	AR1	D	455	464	Right-handed alpha
Helix 155	AR2	D	481	485	Right-handed 310
Helix 156	AR3	D	487	521	Right-handed alpha
Helix 157	AR4	D	523	529	Right-handed alpha
Helix 158	AR5	D	530	537	Right-handed alpha
Helix 159	AR6	D	539	543	Right-handed 310
Helix 160	AR7	D	557	573	Right-handed alpha
Helix 161	AR8	D	579	589	Right-handed alpha
Helix 162	AR9	D	594	604	Right-handed alpha
Helix 163	AS1	D	611	616	Right-handed alpha
Helix 164	AS2	D	617	631	Right-handed alpha
Helix 165	AS3	D	648	654	Right-handed alpha
Helix 166	AS4	D	683	693	Right-handed alpha
Helix 167	AS5	D	694	699	Right-handed 310
Helix 168	AS6	D	710	714	Right-handed 310
Helix 169	AS7	D	715	733	Right-handed alpha
Helix 170	AS8	D	744	754	Right-handed alpha
Helix 171	AS9	D	755	759	Right-handed 310
Helix 172	AT1	D	773	775	Right-handed 310
Helix 173	AT2	D	776	785	Right-handed alpha

There are 23 sheets in PDB entry 8IOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	451	454	anti-parallel
Strand 3	A	552	556	parallel
Strand 4	A	640	642	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	376	381	parallel
Strand 3	A	406	409	parallel
Strand 4	A	737	741	anti-parallel
Strand 5	A	706	709	parallel
Strand 6	A	788	789	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	547	548	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	764	first strand
Strand 2	A	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	79	80	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	452	454	anti-parallel
Strand 3	B	552	556	parallel
Strand 4	B	640	642	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	376	381	parallel
Strand 3	B	406	409	parallel
Strand 4	B	737	738	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	547	548	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	742	first strand
Strand 2	B	707	709	parallel
Strand 3	B	788	789	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	764	first strand
Strand 2	B	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	79	80	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	452	454	anti-parallel
Strand 3	C	552	556	parallel
Strand 4	C	640	642	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	376	381	parallel
Strand 3	C	406	409	parallel
Strand 4	C	737	741	anti-parallel
Strand 5	C	706	709	parallel
Strand 6	C	788	789	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	433	first strand
Strand 2	C	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	547	548	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	764	first strand
Strand 2	C	769	771	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	451	454	anti-parallel
Strand 3	D	552	556	parallel
Strand 4	D	640	642	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	346	first strand
Strand 2	D	376	381	parallel
Strand 3	D	406	409	parallel
Strand 4	D	737	741	anti-parallel
Strand 5	D	706	708	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	445	first strand
Strand 2	D	547	548	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	764	first strand
Strand 2	D	769	771	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IOF