Analysis of interatomic Contacts of Structural Units in PDB entry:
8IOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IOO entry

There are 3 chains in PDB entry 8IOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLN 334
B
 ASP 10GLN 334
C
 PRO 9ALA 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8IOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
38 55Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
157 172Right-handed alpha
Helix 8
AA8
A
181 194Right-handed alpha
Helix 9
AA9
A
197 206Right-handed alpha
Helix 10
AB1
A
209 222Right-handed alpha
Helix 11
AB2
A
237 245Right-handed alpha
Helix 12
AB3
A
253 260Right-handed alpha
Helix 13
AB4
A
288 296Right-handed alpha
Helix 14
AB5
A
312 334Right-handed alpha
Helix 15
AB6
B
11 25Right-handed alpha
Helix 16
AB7
B
38 55Right-handed alpha
Helix 17
AB8
B
66 70Right-handed 310
Helix 18
AB9
B
100 104Right-handed 310
Helix 19
AC1
B
108 112Right-handed 310
Helix 20
AC2
B
140 152Right-handed alpha
Helix 21
AC3
B
157 172Right-handed alpha
Helix 22
AC4
B
181 195Right-handed alpha
Helix 23
AC5
B
197 206Right-handed alpha
Helix 24
AC6
B
209 222Right-handed alpha
Helix 25
AC7
B
227 229Right-handed 310
Helix 26
AC8
B
238 245Right-handed alpha
Helix 27
AC9
B
247 253Right-handed 310
Helix 28
AD1
B
254 260Right-handed alpha
Helix 29
AD2
B
312 334Right-handed alpha
Helix 30
AD3
C
10 25Right-handed alpha
Helix 31
AD4
C
38 55Right-handed alpha
Helix 32
AD5
C
66 70Right-handed 310
Helix 33
AD6
C
100 102Right-handed 310
Helix 34
AD7
C
108 112Right-handed 310
Helix 35
AD8
C
140 152Right-handed alpha
Helix 36
AD9
C
157 172Right-handed alpha
Helix 37
AE1
C
181 194Right-handed alpha
Helix 38
AE2
C
197 206Right-handed alpha
Helix 39
AE3
C
209 222Right-handed alpha
Helix 40
AE4
C
238 245Right-handed alpha
Helix 41
AE5
C
247 252Right-handed 310
Helix 42
AE6
C
253 260Right-handed alpha
Helix 43
AE7
C
288 296Right-handed alpha
Helix 44
AE8
C
312 334Right-handed alpha
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There are 8 sheets in PDB entry 8IOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
29 34parallel
Strand 3
A
104 105anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
29 34parallel
Strand 3
A
90 94parallel
Strand 4
A
116 120parallel
Strand 5
A
131 134parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
266 273parallel
Strand 4
A
276 283anti-parallel
Strand 5
A
304 309anti-parallel
Strand 6
A
299 301anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
29 32parallel
Strand 3
B
90 94parallel
Strand 4
B
116 120parallel
Strand 5
B
131 134parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
231 237anti-parallel
Strand 3
B
266 272parallel
Strand 4
B
277 283anti-parallel
Strand 5
B
308 309anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
29 34parallel
Strand 3
C
104 105anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
29 34parallel
Strand 3
C
90 94parallel
Strand 4
C
116 120parallel
Strand 5
C
131 134parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
231 237anti-parallel
Strand 3
C
266 273parallel
Strand 4
C
276 283anti-parallel
Strand 5
C
304 309anti-parallel
Strand 6
C
299 301anti-parallel
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