Analysis of interatomic Contacts of Structural Units in PDB entry:
8IOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IOY entry

There is 1 chain in PDB entry 8IOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 562GLY 1405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8IOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
575 589Right-handed alpha
Helix 2
AA2
A
614 626Right-handed alpha
Helix 3
AA3
A
637 643Right-handed alpha
Helix 4
AA4
A
643 673Right-handed alpha
Helix 5
AA5
A
682 685Right-handed 310
Helix 6
AA6
A
694 711Right-handed alpha
Helix 7
AA7
A
711 724Right-handed alpha
Helix 8
AA8
A
728 754Right-handed alpha
Helix 9
AA9
A
765 789Right-handed alpha
Helix 10
AB1
A
789 797Right-handed alpha
Helix 11
AB2
A
890 893Right-handed 310
Helix 12
AB3
A
894 907Right-handed alpha
Helix 13
AB4
A
911 923Right-handed alpha
Helix 14
AB5
A
924 946Right-handed alpha
Helix 15
AB6
A
946 952Right-handed alpha
Helix 16
AB7
A
962 981Right-handed alpha
Helix 17
AB8
A
983 1005Right-handed alpha
Helix 18
AB9
A
1012 1018Right-handed alpha
Helix 19
AC1
A
1052 1064Right-handed alpha
Helix 20
AC2
A
1065 1067Right-handed 310
Helix 21
AC3
A
1069 1084Right-handed alpha
Helix 22
AC4
A
1109 1114Right-handed alpha
Helix 23
AC5
A
1150 1157Right-handed alpha
Helix 24
AC6
A
1162 1169Right-handed alpha
Helix 25
AC7
A
1169 1175Right-handed alpha
Helix 26
AC8
A
1201 1212Right-handed alpha
Helix 27
AC9
A
1223 1235Right-handed alpha
Helix 28
AD1
A
1249 1257Right-handed alpha
Helix 29
AD2
A
1268 1270Right-handed 310
Helix 30
AD3
A
1271 1278Right-handed alpha
Helix 31
AD4
A
1304 1340Right-handed alpha
Helix 32
AD5
A
1351 1372Right-handed alpha
Helix 33
AD6
A
1373 1375Right-handed 310
Helix 34
AD7
A
1380 1389Right-handed alpha
Helix 35
AD8
A
1396 1400Right-handed 310
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There are 6 sheets in PDB entry 8IOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 598first strand
Strand 2
A
603 608anti-parallel
Strand 3
A
566 571anti-parallel
Strand 4
A
628 631anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 689first strand
Strand 2
A
692 693anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 821first strand
Strand 2
A
802 807anti-parallel
Strand 3
A
830 833anti-parallel
Strand 4
A
883 889anti-parallel
Strand 5
A
842 847anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
864 866first strand
Strand 2
A
850 853anti-parallel
Strand 3
A
877 878anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1008first strand
Strand 2
A
1297 1299anti-parallel
Strand 3
A
1280 1284parallel
Strand 4
A
1263 1266parallel
Strand 5
A
1023 1027parallel
Strand 6
A
1215 1219parallel
Strand 7
A
1238 1240parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1038 1044first strand
Strand 2
A
1187 1195anti-parallel
Strand 3
A
1179 1184anti-parallel
Strand 4
A
1145 1149anti-parallel
Strand 5
A
1101 1107anti-parallel
Strand 6
A
1090 1095anti-parallel
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