Analysis of interatomic Contacts of Structural Units in PDB entry:
8IOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IOZ entry

There are 2 chains in PDB entry 8IOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19TYR 337
B
 ARG 19TYR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8IOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 69Right-handed alpha
Helix 2
AA2
A
86 101Right-handed alpha
Helix 3
AA3
A
108 124Right-handed alpha
Helix 4
AA4
A
166 173Right-handed alpha
Helix 5
AA5
A
199 212Right-handed alpha
Helix 6
AA6
A
253 265Right-handed alpha
Helix 7
AA7
A
275 281Right-handed alpha
Helix 8
AA8
A
311 324Right-handed alpha
Helix 9
AA9
B
86 100Right-handed alpha
Helix 10
AB1
B
101 103Right-handed 310
Helix 11
AB2
B
108 124Right-handed alpha
Helix 12
AB3
B
166 173Right-handed alpha
Helix 13
AB4
B
199 212Right-handed alpha
Helix 14
AB5
B
253 264Right-handed alpha
Helix 15
AB6
B
275 282Right-handed alpha
Helix 16
AB7
B
311 327Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8IOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
153 160anti-parallel
Strand 4
A
128 135anti-parallel
Strand 5
A
72 80anti-parallel
Strand 6
A
83 85anti-parallel
Strand 7
A
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
B
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
174 177parallel
Strand 3
A
293 300parallel
Strand 4
A
284 289anti-parallel
Strand 5
A
233 238anti-parallel
Strand 6
A
241 244anti-parallel
Strand 7
A
269 271parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
174 177parallel
Strand 3
A
293 300parallel
Strand 4
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
154 160anti-parallel
Strand 4
B
128 134anti-parallel
Strand 5
B
73 80anti-parallel
Strand 6
B
83 85anti-parallel
Strand 7
B
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
174 177parallel
Strand 3
B
293 300parallel
Strand 4
B
284 289anti-parallel
Strand 5
B
233 238anti-parallel
Strand 6
B
241 245anti-parallel
Strand 7
B
269 272parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
174 177parallel
Strand 3
B
293 300parallel
Strand 4
B
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
226 228anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il