Analysis of interatomic Contacts of Structural Units in PDB entry:
8IP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IP0 entry

There are 16 chains in PDB entry 8IP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	GLU 7	GLN 541
A	THR 12	GLY 237
B	ASN 3	VAL 301
C	ASN 3	VAL 301
D	ASN 3	VAL 301
N	ASN 3	VAL 301
O	ASN 3	LEU 299
E	T -3	C 11
F	A 1	G 44
G	A 20	A 60
P	A 28	A 37
H	ASN 3	VAL 301
I	ASN 3	VAL 301
K	ARG 9	LYS 118
L	GLU 10	TYR 115
M	ARG 9	LYS 118

There are104 helices in PDB entry 8IP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	20	39	Right-handed alpha
Helix 2	AA2	J	40	51	Right-handed alpha
Helix 3	AA3	J	69	81	Right-handed alpha
Helix 4	AA4	J	128	133	Right-handed alpha
Helix 5	AA5	J	135	137	Right-handed 310
Helix 6	AA6	J	138	151	Right-handed alpha
Helix 7	AA7	J	158	166	Right-handed alpha
Helix 8	AA8	J	177	189	Right-handed alpha
Helix 9	AA9	J	217	224	Right-handed alpha
Helix 10	AB1	J	226	231	Right-handed alpha
Helix 11	AB2	J	259	271	Right-handed alpha
Helix 12	AB3	J	272	274	Right-handed 310
Helix 13	AB4	J	290	309	Right-handed alpha
Helix 14	AB5	J	348	357	Right-handed alpha
Helix 15	AB6	J	365	373	Right-handed alpha
Helix 16	AB7	J	383	387	Right-handed 310
Helix 17	AB8	J	391	398	Right-handed alpha
Helix 18	AB9	J	400	404	Right-handed 310
Helix 19	AC1	J	415	423	Right-handed alpha
Helix 20	AC2	J	439	458	Right-handed alpha
Helix 21	AC3	J	470	489	Right-handed alpha
Helix 22	AC4	J	498	507	Right-handed alpha
Helix 23	AC5	J	514	524	Right-handed alpha
Helix 24	AC6	J	525	532	Right-handed alpha
Helix 25	AC7	J	535	540	Right-handed 310
Helix 26	AC8	A	40	52	Right-handed alpha
Helix 27	AC9	A	106	111	Right-handed alpha
Helix 28	AD1	A	138	150	Right-handed alpha
Helix 29	AD2	B	45	60	Right-handed alpha
Helix 30	AD3	B	89	93	Right-handed 310
Helix 31	AD4	B	102	106	Right-handed 310
Helix 32	AD5	B	181	194	Right-handed alpha
Helix 33	AD6	B	237	249	Right-handed alpha
Helix 34	AD7	B	262	267	Right-handed 310
Helix 35	AD8	B	269	276	Right-handed alpha
Helix 36	AD9	B	286	301	Right-handed alpha
Helix 37	AE1	C	45	60	Right-handed alpha
Helix 38	AE2	C	103	107	Right-handed 310
Helix 39	AE3	C	180	192	Right-handed alpha
Helix 40	AE4	C	231	235	Right-handed 310
Helix 41	AE5	C	240	244	Right-handed 310
Helix 42	AE6	C	262	267	Right-handed alpha
Helix 43	AE7	C	269	278	Right-handed alpha
Helix 44	AE8	C	286	299	Right-handed alpha
Helix 45	AE9	D	47	57	Right-handed alpha
Helix 46	AF1	D	89	94	Right-handed alpha
Helix 47	AF2	D	105	110	Right-handed alpha
Helix 48	AF3	D	180	192	Right-handed alpha
Helix 49	AF4	D	237	245	Right-handed alpha
Helix 50	AF5	D	262	267	Right-handed alpha
Helix 51	AF6	D	269	276	Right-handed alpha
Helix 52	AF7	D	286	300	Right-handed alpha
Helix 53	AF8	N	45	57	Right-handed alpha
Helix 54	AF9	N	58	61	Right-handed 310
Helix 55	AG1	N	89	94	Right-handed alpha
Helix 56	AG2	N	105	110	Right-handed alpha
Helix 57	AG3	N	180	195	Right-handed alpha
Helix 58	AG4	N	237	245	Right-handed alpha
Helix 59	AG5	N	261	267	Right-handed alpha
Helix 60	AG6	N	269	276	Right-handed alpha
Helix 61	AG7	N	286	300	Right-handed alpha
Helix 62	AG8	O	46	60	Right-handed alpha
Helix 63	AG9	O	87	94	Right-handed alpha
Helix 64	AH1	O	101	106	Right-handed alpha
Helix 65	AH2	O	175	180	Right-handed alpha
Helix 66	AH3	O	181	192	Right-handed alpha
Helix 67	AH4	O	271	279	Right-handed alpha
Helix 68	AH5	O	289	299	Right-handed alpha
Helix 69	AH6	H	45	57	Right-handed alpha
Helix 70	AH7	H	58	61	Right-handed 310
Helix 71	AH8	H	89	94	Right-handed alpha
Helix 72	AH9	H	105	110	Right-handed alpha
Helix 73	AI1	H	180	195	Right-handed alpha
Helix 74	AI2	H	237	245	Right-handed alpha
Helix 75	AI3	H	261	267	Right-handed alpha
Helix 76	AI4	H	269	276	Right-handed alpha
Helix 77	AI5	H	286	300	Right-handed alpha
Helix 78	AI6	I	45	57	Right-handed alpha
Helix 79	AI7	I	89	94	Right-handed alpha
Helix 80	AI8	I	105	110	Right-handed alpha
Helix 81	AI9	I	180	195	Right-handed alpha
Helix 82	AJ1	I	237	245	Right-handed alpha
Helix 83	AJ2	I	261	267	Right-handed alpha
Helix 84	AJ3	I	269	276	Right-handed alpha
Helix 85	AJ4	I	286	300	Right-handed alpha
Helix 86	AJ5	K	10	31	Right-handed alpha
Helix 87	AJ6	K	34	39	Right-handed alpha
Helix 88	AJ7	K	41	68	Right-handed alpha
Helix 89	AJ8	K	72	81	Right-handed alpha
Helix 90	AJ9	K	88	99	Right-handed alpha
Helix 91	AK1	K	101	112	Right-handed alpha
Helix 92	AK2	L	11	31	Right-handed alpha
Helix 93	AK3	L	43	65	Right-handed alpha
Helix 94	AK4	L	70	81	Right-handed alpha
Helix 95	AK5	L	88	99	Right-handed alpha
Helix 96	AK6	L	102	106	Right-handed 310
Helix 97	AK7	L	109	113	Right-handed 310
Helix 98	AK8	M	10	31	Right-handed alpha
Helix 99	AK9	M	35	40	Right-handed 310
Helix 100	AL1	M	41	64	Right-handed alpha
Helix 101	AL2	M	66	81	Right-handed alpha
Helix 102	AL3	M	82	84	Right-handed 310
Helix 103	AL4	M	85	99	Right-handed alpha
Helix 104	AL5	M	103	113	Right-handed alpha

There are 33 sheets in PDB entry 8IP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	14	first strand
Strand 2	J	63	68	anti-parallel
Strand 3	J	54	55	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	83	89	first strand
Strand 2	J	118	124	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	245	247	first strand
Strand 2	J	232	239	anti-parallel
Strand 3	J	287	288	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	245	247	first strand
Strand 2	J	232	239	anti-parallel
Strand 3	J	250	257	anti-parallel
Strand 4	J	319	330	anti-parallel
Strand 5	J	333	341	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	278	279	first strand
Strand 2	J	282	283	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	129	136	anti-parallel
Strand 4	A	77	79	anti-parallel
Strand 5	A	233	234	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	218	221	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	123	126	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	167	170	anti-parallel
Strand 3	B	125	127	anti-parallel
Strand 4	B	43	44	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	76	78	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	158	160	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	167	173	anti-parallel
Strand 3	C	125	127	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	33	36	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	167	173	anti-parallel
Strand 3	C	121	122	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	168	172	anti-parallel
Strand 3	D	7	12	anti-parallel
Strand 4	D	211	217	anti-parallel
Strand 5	D	258	260	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	163	165	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	39	42	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	76	77	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	140	first strand
Strand 2	D	156	158	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	168	172	first strand
Strand 2	N	7	12	anti-parallel
Strand 3	N	211	217	anti-parallel
Strand 4	N	258	259	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	17	first strand
Strand 2	N	163	165	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	36	first strand
Strand 2	N	39	42	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	67	69	first strand
Strand 2	N	76	78	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	138	140	first strand
Strand 2	N	156	158	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	122	first strand
Strand 2	H	168	172	anti-parallel
Strand 3	H	7	12	anti-parallel
Strand 4	H	211	217	anti-parallel
Strand 5	H	258	260	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	17	first strand
Strand 2	H	163	165	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	36	first strand
Strand 2	H	39	42	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	69	first strand
Strand 2	H	76	78	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	140	first strand
Strand 2	H	156	158	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	122	first strand
Strand 2	I	168	172	anti-parallel
Strand 3	I	7	12	anti-parallel
Strand 4	I	211	217	anti-parallel
Strand 5	I	259	260	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	17	first strand
Strand 2	I	163	165	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	36	first strand
Strand 2	I	39	40	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	69	first strand
Strand 2	I	76	78	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	140	first strand
Strand 2	I	156	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IP0