Analysis of interatomic Contacts of Structural Units in PDB entry:
8IP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IP2 entry

There is 1 chain in PDB entry 8IP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLU 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8IP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
109 111Right-handed 310
Helix 6
AA6
A
318 322Right-handed 310
Helix 7
AA7
A
328 332Right-handed 310
Helix 8
AA8
A
390 395Right-handed 310
Helix 9
AA9
A
435 439Right-handed 310
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There are 6 sheets in PDB entry 8IP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
113 114anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
156 159anti-parallel
Strand 5
A
169 171anti-parallel
Strand 6
A
245 252anti-parallel
Strand 7
A
173 175anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
156 159anti-parallel
Strand 5
A
169 171anti-parallel
Strand 6
A
245 252anti-parallel
Strand 7
A
363 369anti-parallel
Strand 8
A
345 352anti-parallel
Strand 9
A
298 305anti-parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
187 194parallel
Strand 4
A
203 211anti-parallel
Strand 5
A
214 223anti-parallel
Strand 6
A
228 238anti-parallel
Strand 7
A
378 388anti-parallel
Strand 8
A
334 339anti-parallel
Strand 9
A
309 313anti-parallel
Strand 10
A
276 280anti-parallel
Strand 11
A
286 290anti-parallel
Strand 12
A
502 507parallel
Strand 13
A
486 493anti-parallel
Strand 14
A
446 451anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
271 272anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 413first strand
Strand 2
A
419 432anti-parallel
Strand 3
A
470 479anti-parallel
Strand 4
A
455 465anti-parallel
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