Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPJ entry

There are 2 chains in PDB entry 8IPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42GLU 404
B
 SER 0ARG 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8IPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 64Right-handed alpha
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
118 126Right-handed alpha
Helix 5
AA5
A
142 146Right-handed 310
Helix 6
AA6
A
172 178Right-handed alpha
Helix 7
AA7
A
185 211Right-handed alpha
Helix 8
AA8
A
225 232Right-handed 310
Helix 9
AA9
A
234 251Right-handed alpha
Helix 10
AB1
A
252 254Right-handed 310
Helix 11
AB2
A
321 327Right-handed 310
Helix 12
AB3
A
330 339Right-handed alpha
Helix 13
AB4
A
341 348Right-handed alpha
Helix 14
AB5
A
363 368Right-handed alpha
Helix 15
AB6
A
375 384Right-handed alpha
Helix 16
AB7
B
22 35Right-handed alpha
Helix 17
AB8
B
37 41Right-handed 310
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There are 4 sheets in PDB entry 8IPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
257 263parallel
Strand 4
A
214 220parallel
Strand 5
A
306 314parallel
Strand 6
A
148 161parallel
Strand 7
A
129 138anti-parallel
Strand 8
A
44 47anti-parallel
Strand 9
A
391 394parallel
Strand 10
A
400 401anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
359 361anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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