Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPK entry

There is 1 chain in PDB entry 8IPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LEU 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8IPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
31 41Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
76 87Right-handed alpha
Helix 5
AA5
A
104 110Right-handed alpha
Helix 6
AA6
A
111 114Right-handed 310
Helix 7
AA7
A
137 145Right-handed alpha
Helix 8
AA8
A
146 159Right-handed alpha
Helix 9
AA9
A
162 175Right-handed alpha
Helix 10
AB1
A
181 192Right-handed alpha
Helix 11
AB2
A
194 199Right-handed alpha
Helix 12
AB3
A
201 206Right-handed 310
Helix 13
AB4
A
212 225Right-handed alpha
Helix 14
AB5
A
225 240Right-handed alpha
Helix 15
AB6
A
253 265Right-handed alpha
Helix 16
AB7
A
271 275Right-handed 310
Helix 17
AB8
A
276 283Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8IPK.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
44 50parallel
Strand 3
A
21 25parallel
Strand 4
A
94 100parallel
Strand 5
A
241 251parallel
Strand 6
A
331 337anti-parallel
Strand 7
A
306 313anti-parallel
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