Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPQ entry

There are 4 chains in PDB entry 8IPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER -5SER 505
A
 HIS 6THR 507
C
 SER -5SER 505
D
 HIS 6THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 8IPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
-5 24Right-handed alpha
Helix 2
AA2
B
34 80Right-handed alpha
Helix 3
AA3
B
83 98Right-handed alpha
Helix 4
AA4
B
102 104Right-handed 310
Helix 5
AA5
B
105 112Right-handed alpha
Helix 6
AA6
B
112 134Right-handed alpha
Helix 7
AA7
B
134 145Right-handed alpha
Helix 8
AA8
B
147 159Right-handed alpha
Helix 9
AA9
B
161 183Right-handed alpha
Helix 10
AB1
B
183 189Right-handed alpha
Helix 11
AB2
B
196 219Right-handed alpha
Helix 12
AB3
B
219 245Right-handed alpha
Helix 13
AB4
B
250 276Right-handed alpha
Helix 14
AB5
B
278 290Right-handed alpha
Helix 15
AB6
B
335 344Right-handed alpha
Helix 16
AB7
B
362 364Right-handed 310
Helix 17
AB8
B
365 371Right-handed alpha
Helix 18
AB9
B
387 391Right-handed alpha
Helix 19
AC1
B
399 408Right-handed alpha
Helix 20
AC2
B
409 416Right-handed alpha
Helix 21
AC3
B
432 446Right-handed alpha
Helix 22
AC4
B
462 479Right-handed alpha
Helix 23
AC5
B
489 494Right-handed alpha
Helix 24
AC6
A
7 16Right-handed alpha
Helix 25
AC7
A
20 54Right-handed alpha
Helix 26
AC8
A
59 105Right-handed alpha
Helix 27
AC9
A
118 126Right-handed alpha
Helix 28
AD1
A
126 135Right-handed alpha
Helix 29
AD2
A
140 161Right-handed alpha
Helix 30
AD3
A
164 193Right-handed alpha
Helix 31
AD4
A
198 205Right-handed alpha
Helix 32
AD5
A
211 218Right-handed alpha
Helix 33
AD6
A
220 244Right-handed alpha
Helix 34
AD7
A
244 270Right-handed alpha
Helix 35
AD8
A
276 286Right-handed alpha
Helix 36
AD9
A
287 290Right-handed 310
Helix 37
AE1
A
293 297Right-handed 310
Helix 38
AE2
A
299 317Right-handed alpha
Helix 39
AE3
A
349 363Right-handed alpha
Helix 40
AE4
A
385 391Right-handed alpha
Helix 41
AE5
A
398 410Right-handed alpha
Helix 42
AE6
A
411 417Right-handed alpha
Helix 43
AE7
A
420 424Right-handed 310
Helix 44
AE8
A
428 433Right-handed 310
Helix 45
AE9
A
434 449Right-handed alpha
Helix 46
AF1
A
467 477Right-handed alpha
Helix 47
AF2
C
-4 24Right-handed alpha
Helix 48
AF3
C
34 80Right-handed alpha
Helix 49
AF4
C
83 98Right-handed alpha
Helix 50
AF5
C
102 104Right-handed 310
Helix 51
AF6
C
105 112Right-handed alpha
Helix 52
AF7
C
112 134Right-handed alpha
Helix 53
AF8
C
134 145Right-handed alpha
Helix 54
AF9
C
147 159Right-handed alpha
Helix 55
AG1
C
161 183Right-handed alpha
Helix 56
AG2
C
183 189Right-handed alpha
Helix 57
AG3
C
196 219Right-handed alpha
Helix 58
AG4
C
219 245Right-handed alpha
Helix 59
AG5
C
250 276Right-handed alpha
Helix 60
AG6
C
278 290Right-handed alpha
Helix 61
AG7
C
335 344Right-handed alpha
Helix 62
AG8
C
362 364Right-handed 310
Helix 63
AG9
C
365 371Right-handed alpha
Helix 64
AH1
C
387 391Right-handed alpha
Helix 65
AH2
C
399 408Right-handed alpha
Helix 66
AH3
C
409 416Right-handed alpha
Helix 67
AH4
C
432 446Right-handed alpha
Helix 68
AH5
C
462 479Right-handed alpha
Helix 69
AH6
C
489 494Right-handed alpha
Helix 70
AH7
D
7 16Right-handed alpha
Helix 71
AH8
D
20 54Right-handed alpha
Helix 72
AH9
D
59 105Right-handed alpha
Helix 73
AI1
D
117 126Right-handed alpha
Helix 74
AI2
D
126 135Right-handed alpha
Helix 75
AI3
D
140 161Right-handed alpha
Helix 76
AI4
D
164 193Right-handed alpha
Helix 77
AI5
D
198 205Right-handed alpha
Helix 78
AI6
D
211 218Right-handed alpha
Helix 79
AI7
D
220 244Right-handed alpha
Helix 80
AI8
D
244 270Right-handed alpha
Helix 81
AI9
D
276 286Right-handed alpha
Helix 82
AJ1
D
287 290Right-handed 310
Helix 83
AJ2
D
293 297Right-handed 310
Helix 84
AJ3
D
299 317Right-handed alpha
Helix 85
AJ4
D
349 363Right-handed alpha
Helix 86
AJ5
D
385 391Right-handed alpha
Helix 87
AJ6
D
398 410Right-handed alpha
Helix 88
AJ7
D
411 417Right-handed alpha
Helix 89
AJ8
D
420 424Right-handed 310
Helix 90
AJ9
D
428 433Right-handed 310
Helix 91
AK1
D
434 449Right-handed alpha
Helix 92
AK2
D
467 477Right-handed alpha
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There are 8 sheets in PDB entry 8IPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
311 313anti-parallel
Strand 3
B
355 356anti-parallel
Strand 4
B
359 360anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
451 454parallel
Strand 3
B
482 484parallel
Strand 4
B
325 328parallel
Strand 5
B
498 500parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
423 424anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
487 491parallel
Strand 3
A
453 457parallel
Strand 4
A
372 375parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 320first strand
Strand 2
C
311 313anti-parallel
Strand 3
C
355 356anti-parallel
Strand 4
C
359 360anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 376first strand
Strand 2
C
451 454parallel
Strand 3
C
482 484parallel
Strand 4
C
325 328parallel
Strand 5
C
498 500parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
423 424anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
339 340first strand
Strand 2
D
487 491parallel
Strand 3
D
453 457parallel
Strand 4
D
372 375parallel
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