Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPR entry

There are 4 chains in PDB entry 8IPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4THR 507
C
 SER -5PRO 509
D
 LEU 4THR 507
E
 SER -5PRO 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8IPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
20 41Right-handed alpha
Helix 3
AA3
A
56 108Right-handed alpha
Helix 4
AA4
A
109 114Right-handed alpha
Helix 5
AA5
A
117 126Right-handed alpha
Helix 6
AA6
A
126 161Right-handed alpha
Helix 7
AA7
A
161 202Right-handed alpha
Helix 8
AA8
A
202 211Right-handed alpha
Helix 9
AA9
A
211 218Right-handed alpha
Helix 10
AB1
A
220 269Right-handed alpha
Helix 11
AB2
A
277 319Right-handed alpha
Helix 12
AB3
A
349 363Right-handed alpha
Helix 13
AB4
A
385 391Right-handed alpha
Helix 14
AB5
A
398 409Right-handed alpha
Helix 15
AB6
A
411 417Right-handed alpha
Helix 16
AB7
A
420 424Right-handed 310
Helix 17
AB8
A
428 433Right-handed 310
Helix 18
AB9
A
434 449Right-handed alpha
Helix 19
AC1
A
464 477Right-handed alpha
Helix 20
AC2
C
-4 24Right-handed alpha
Helix 21
AC3
C
35 80Right-handed alpha
Helix 22
AC4
C
83 91Right-handed alpha
Helix 23
AC5
C
93 100Right-handed alpha
Helix 24
AC6
C
101 104Right-handed 310
Helix 25
AC7
C
105 110Right-handed alpha
Helix 26
AC8
C
112 134Right-handed alpha
Helix 27
AC9
C
134 142Right-handed alpha
Helix 28
AD1
C
143 145Right-handed 310
Helix 29
AD2
C
146 183Right-handed alpha
Helix 30
AD3
C
183 191Right-handed alpha
Helix 31
AD4
C
195 246Right-handed alpha
Helix 32
AD5
C
250 293Right-handed alpha
Helix 33
AD6
C
335 345Right-handed alpha
Helix 34
AD7
C
362 364Right-handed 310
Helix 35
AD8
C
365 370Right-handed alpha
Helix 36
AD9
C
387 392Right-handed alpha
Helix 37
AE1
C
399 408Right-handed alpha
Helix 38
AE2
C
409 416Right-handed alpha
Helix 39
AE3
C
432 446Right-handed alpha
Helix 40
AE4
C
462 479Right-handed alpha
Helix 41
AE5
C
489 494Right-handed alpha
Helix 42
AE6
D
7 17Right-handed alpha
Helix 43
AE7
D
20 41Right-handed alpha
Helix 44
AE8
D
56 108Right-handed alpha
Helix 45
AE9
D
109 114Right-handed alpha
Helix 46
AF1
D
117 126Right-handed alpha
Helix 47
AF2
D
126 161Right-handed alpha
Helix 48
AF3
D
161 202Right-handed alpha
Helix 49
AF4
D
202 211Right-handed alpha
Helix 50
AF5
D
211 218Right-handed alpha
Helix 51
AF6
D
220 269Right-handed alpha
Helix 52
AF7
D
277 319Right-handed alpha
Helix 53
AF8
D
349 363Right-handed alpha
Helix 54
AF9
D
385 391Right-handed alpha
Helix 55
AG1
D
398 409Right-handed alpha
Helix 56
AG2
D
411 417Right-handed alpha
Helix 57
AG3
D
420 424Right-handed 310
Helix 58
AG4
D
428 433Right-handed 310
Helix 59
AG5
D
434 449Right-handed alpha
Helix 60
AG6
D
464 477Right-handed alpha
Helix 61
AG7
E
-4 24Right-handed alpha
Helix 62
AG8
E
35 80Right-handed alpha
Helix 63
AG9
E
83 91Right-handed alpha
Helix 64
AH1
E
93 100Right-handed alpha
Helix 65
AH2
E
101 104Right-handed 310
Helix 66
AH3
E
105 110Right-handed alpha
Helix 67
AH4
E
112 134Right-handed alpha
Helix 68
AH5
E
134 142Right-handed alpha
Helix 69
AH6
E
143 145Right-handed 310
Helix 70
AH7
E
146 183Right-handed alpha
Helix 71
AH8
E
183 191Right-handed alpha
Helix 72
AH9
E
195 246Right-handed alpha
Helix 73
AI1
E
250 293Right-handed alpha
Helix 74
AI2
E
335 345Right-handed alpha
Helix 75
AI3
E
362 364Right-handed 310
Helix 76
AI4
E
365 370Right-handed alpha
Helix 77
AI5
E
387 392Right-handed alpha
Helix 78
AI6
E
399 408Right-handed alpha
Helix 79
AI7
E
409 416Right-handed alpha
Helix 80
AI8
E
432 446Right-handed alpha
Helix 81
AI9
E
462 479Right-handed alpha
Helix 82
AJ1
E
489 494Right-handed alpha
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There are 8 sheets in PDB entry 8IPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
487 491parallel
Strand 3
A
453 457parallel
Strand 4
A
372 375parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 320first strand
Strand 2
C
311 313anti-parallel
Strand 3
C
355 356anti-parallel
Strand 4
C
359 360anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
373 376first strand
Strand 2
C
451 454parallel
Strand 3
C
482 485parallel
Strand 4
C
325 328parallel
Strand 5
C
498 500parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
423 424anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
339 340first strand
Strand 2
D
487 491parallel
Strand 3
D
453 457parallel
Strand 4
D
372 375parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
318 320first strand
Strand 2
E
311 313anti-parallel
Strand 3
E
355 356anti-parallel
Strand 4
E
359 360anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
373 376first strand
Strand 2
E
451 454parallel
Strand 3
E
482 485parallel
Strand 4
E
325 328parallel
Strand 5
E
498 500parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
385 386first strand
Strand 2
E
423 424anti-parallel
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