Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPS entry

There are 2 chains in PDB entry 8IPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 573
B
 MET 1ILE 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8IPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
10 13Right-handed 310
Helix 3
AA3
A
15 50Right-handed alpha
Helix 4
AA4
A
51 54Right-handed 310
Helix 5
AA5
A
60 104Right-handed alpha
Helix 6
AA6
A
119 157Right-handed alpha
Helix 7
AA7
A
159 181Right-handed alpha
Helix 8
AA8
A
183 210Right-handed alpha
Helix 9
AA9
A
211 216Right-handed alpha
Helix 10
AB1
A
222 266Right-handed alpha
Helix 11
AB2
A
279 292Right-handed alpha
Helix 12
AB3
A
294 299Right-handed alpha
Helix 13
AB4
A
300 302Right-handed 310
Helix 14
AB5
A
303 319Right-handed alpha
Helix 15
AB6
A
378 387Right-handed alpha
Helix 16
AB7
A
408 415Right-handed alpha
Helix 17
AB8
A
429 435Right-handed alpha
Helix 18
AB9
A
442 452Right-handed alpha
Helix 19
AC1
A
476 491Right-handed alpha
Helix 20
AC2
A
506 520Right-handed alpha
Helix 21
AC3
A
555 560Right-handed alpha
Helix 22
AC4
B
2 16Right-handed alpha
Helix 23
AC5
B
20 54Right-handed alpha
Helix 24
AC6
B
58 62Right-handed 310
Helix 25
AC7
B
63 110Right-handed alpha
Helix 26
AC8
B
110 115Right-handed alpha
Helix 27
AC9
B
120 159Right-handed alpha
Helix 28
AD1
B
164 183Right-handed alpha
Helix 29
AD2
B
189 211Right-handed alpha
Helix 30
AD3
B
211 218Right-handed alpha
Helix 31
AD4
B
224 240Right-handed alpha
Helix 32
AD5
B
242 247Right-handed alpha
Helix 33
AD6
B
247 272Right-handed alpha
Helix 34
AD7
B
286 310Right-handed alpha
Helix 35
AD8
B
310 329Right-handed alpha
Helix 36
AD9
B
388 390Right-handed 310
Helix 37
AE1
B
391 397Right-handed alpha
Helix 38
AE2
B
417 422Right-handed alpha
Helix 39
AE3
B
438 444Right-handed alpha
Helix 40
AE4
B
480 484Right-handed 310
Helix 41
AE5
B
487 491Right-handed 310
Helix 42
AE6
B
493 502Right-handed alpha
Helix 43
AE7
B
517 533Right-handed alpha
Helix 44
AE8
B
566 571Right-handed alpha
Helix 45
AE9
B
575 588Right-handed alpha
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There are 4 sheets in PDB entry 8IPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
395 399anti-parallel
Strand 4
A
402 403anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 419first strand
Strand 2
A
495 498parallel
Strand 3
A
525 529parallel
Strand 4
A
368 372parallel
Strand 5
A
541 546parallel
Strand 6
A
549 554anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 373first strand
Strand 2
B
350 358anti-parallel
Strand 3
B
401 408anti-parallel
Strand 4
B
411 412anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 428first strand
Strand 2
B
506 510parallel
Strand 3
B
537 540parallel
Strand 4
B
378 383parallel
Strand 5
B
552 557parallel
Strand 6
B
560 565anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il