Analysis of interatomic Contacts of Structural Units in PDB entry:
8IPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IPT entry

There are 4 chains in PDB entry 8IPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1LEU 573
A
 MET 1ILE 588
D
 MET 1LEU 573
E
 MET 1ILE 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 8IPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 3Right-handed 310
Helix 2
AA2
C
4 9Right-handed alpha
Helix 3
AA3
C
14 49Right-handed alpha
Helix 4
AA4
C
57 59Right-handed 310
Helix 5
AA5
C
60 104Right-handed alpha
Helix 6
AA6
C
115 125Right-handed alpha
Helix 7
AA7
C
130 136Right-handed alpha
Helix 8
AA8
C
138 156Right-handed alpha
Helix 9
AA9
C
159 207Right-handed alpha
Helix 10
AB1
C
209 216Right-handed alpha
Helix 11
AB2
C
219 266Right-handed alpha
Helix 12
AB3
C
279 295Right-handed alpha
Helix 13
AB4
C
296 303Right-handed alpha
Helix 14
AB5
C
303 319Right-handed alpha
Helix 15
AB6
C
378 386Right-handed alpha
Helix 16
AB7
C
408 413Right-handed alpha
Helix 17
AB8
C
429 435Right-handed alpha
Helix 18
AB9
C
444 453Right-handed alpha
Helix 19
AC1
C
478 487Right-handed alpha
Helix 20
AC2
C
506 521Right-handed alpha
Helix 21
AC3
C
557 562Right-handed alpha
Helix 22
AC4
C
566 572Right-handed alpha
Helix 23
AC5
A
2 16Right-handed alpha
Helix 24
AC6
A
20 55Right-handed alpha
Helix 25
AC7
A
58 61Right-handed 310
Helix 26
AC8
A
62 110Right-handed alpha
Helix 27
AC9
A
110 115Right-handed alpha
Helix 28
AD1
A
118 132Right-handed alpha
Helix 29
AD2
A
133 139Right-handed alpha
Helix 30
AD3
A
139 159Right-handed alpha
Helix 31
AD4
A
162 173Right-handed alpha
Helix 32
AD5
A
174 181Right-handed alpha
Helix 33
AD6
A
183 211Right-handed alpha
Helix 34
AD7
A
211 219Right-handed alpha
Helix 35
AD8
A
222 273Right-handed alpha
Helix 36
AD9
A
286 328Right-handed alpha
Helix 37
AE1
A
388 398Right-handed alpha
Helix 38
AE2
A
412 416Right-handed 310
Helix 39
AE3
A
417 422Right-handed alpha
Helix 40
AE4
A
423 425Right-handed 310
Helix 41
AE5
A
438 443Right-handed alpha
Helix 42
AE6
A
452 461Right-handed alpha
Helix 43
AE7
A
467 471Right-handed 310
Helix 44
AE8
A
488 500Right-handed alpha
Helix 45
AE9
A
517 533Right-handed alpha
Helix 46
AF1
A
566 571Right-handed alpha
Helix 47
AF2
A
575 588Right-handed alpha
Helix 48
AF3
D
1 3Right-handed 310
Helix 49
AF4
D
4 9Right-handed alpha
Helix 50
AF5
D
14 49Right-handed alpha
Helix 51
AF6
D
57 59Right-handed 310
Helix 52
AF7
D
60 104Right-handed alpha
Helix 53
AF8
D
115 125Right-handed alpha
Helix 54
AF9
D
130 136Right-handed alpha
Helix 55
AG1
D
138 156Right-handed alpha
Helix 56
AG2
D
159 207Right-handed alpha
Helix 57
AG3
D
209 216Right-handed alpha
Helix 58
AG4
D
219 266Right-handed alpha
Helix 59
AG5
D
279 295Right-handed alpha
Helix 60
AG6
D
296 303Right-handed alpha
Helix 61
AG7
D
303 319Right-handed alpha
Helix 62
AG8
D
378 386Right-handed alpha
Helix 63
AG9
D
408 413Right-handed alpha
Helix 64
AH1
D
429 435Right-handed alpha
Helix 65
AH2
D
444 453Right-handed alpha
Helix 66
AH3
D
478 487Right-handed alpha
Helix 67
AH4
D
506 521Right-handed alpha
Helix 68
AH5
D
557 562Right-handed alpha
Helix 69
AH6
D
566 572Right-handed alpha
Helix 70
AH7
E
2 16Right-handed alpha
Helix 71
AH8
E
20 55Right-handed alpha
Helix 72
AH9
E
58 61Right-handed 310
Helix 73
AI1
E
62 110Right-handed alpha
Helix 74
AI2
E
110 115Right-handed alpha
Helix 75
AI3
E
118 132Right-handed alpha
Helix 76
AI4
E
133 139Right-handed alpha
Helix 77
AI5
E
139 159Right-handed alpha
Helix 78
AI6
E
162 173Right-handed alpha
Helix 79
AI7
E
174 181Right-handed alpha
Helix 80
AI8
E
183 211Right-handed alpha
Helix 81
AI9
E
211 219Right-handed alpha
Helix 82
AJ1
E
222 273Right-handed alpha
Helix 83
AJ2
E
286 328Right-handed alpha
Helix 84
AJ3
E
388 398Right-handed alpha
Helix 85
AJ4
E
412 416Right-handed 310
Helix 86
AJ5
E
417 422Right-handed alpha
Helix 87
AJ6
E
423 425Right-handed 310
Helix 88
AJ7
E
438 443Right-handed alpha
Helix 89
AJ8
E
452 461Right-handed alpha
Helix 90
AJ9
E
467 471Right-handed 310
Helix 91
AK1
E
488 500Right-handed alpha
Helix 92
AK2
E
517 533Right-handed alpha
Helix 93
AK3
E
566 571Right-handed alpha
Helix 94
AK4
E
575 588Right-handed alpha
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There are 10 sheets in PDB entry 8IPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 363first strand
Strand 2
C
339 345anti-parallel
Strand 3
C
394 399anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
417 419first strand
Strand 2
C
495 498parallel
Strand 3
C
525 529parallel
Strand 4
C
368 372parallel
Strand 5
C
540 544parallel
Strand 6
C
549 552anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
407 408anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
553 557parallel
Strand 3
A
560 565anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
537 539parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
361 363first strand
Strand 2
D
339 345anti-parallel
Strand 3
D
394 399anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
417 419first strand
Strand 2
D
495 498parallel
Strand 3
D
525 529parallel
Strand 4
D
368 372parallel
Strand 5
D
540 544parallel
Strand 6
D
549 552anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
369 372first strand
Strand 2
E
350 355anti-parallel
Strand 3
E
407 408anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
380 382first strand
Strand 2
E
553 557parallel
Strand 3
E
560 565anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
507 509first strand
Strand 2
E
537 539parallel
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