Analysis of interatomic Contacts of Structural Units in PDB entry:
8IRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IRM entry

There are 2 chains in PDB entry 8IRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18LYS 557
B
 PRO 18LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8IRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
46 61Right-handed alpha
Helix 5
AA5
A
62 74Right-handed alpha
Helix 6
AA6
A
79 83Right-handed 310
Helix 7
AA7
A
93 97Right-handed 310
Helix 8
AA8
A
108 113Right-handed 310
Helix 9
AA9
A
117 149Right-handed alpha
Helix 10
AB1
A
159 169Right-handed alpha
Helix 11
AB2
A
180 202Right-handed alpha
Helix 12
AB3
A
203 211Right-handed alpha
Helix 13
AB4
A
212 232Right-handed alpha
Helix 14
AB5
A
255 257Right-handed 310
Helix 15
AB6
A
294 313Right-handed alpha
Helix 16
AB7
A
317 331Right-handed alpha
Helix 17
AB8
A
343 355Right-handed alpha
Helix 18
AB9
A
370 374Right-handed 310
Helix 19
AC1
A
376 405Right-handed alpha
Helix 20
AC2
A
416 435Right-handed alpha
Helix 21
AC3
A
444 452Right-handed alpha
Helix 22
AC4
A
456 470Right-handed alpha
Helix 23
AC5
A
472 477Right-handed alpha
Helix 24
AC6
A
480 496Right-handed alpha
Helix 25
AC7
A
497 502Right-handed 310
Helix 26
AC8
A
506 523Right-handed alpha
Helix 27
AC9
A
525 554Right-handed alpha
Helix 28
AD1
B
19 30Right-handed alpha
Helix 29
AD2
B
31 37Right-handed alpha
Helix 30
AD3
B
46 61Right-handed alpha
Helix 31
AD4
B
62 74Right-handed alpha
Helix 32
AD5
B
79 83Right-handed 310
Helix 33
AD6
B
93 97Right-handed 310
Helix 34
AD7
B
108 113Right-handed 310
Helix 35
AD8
B
117 149Right-handed alpha
Helix 36
AD9
B
159 169Right-handed alpha
Helix 37
AE1
B
180 201Right-handed alpha
Helix 38
AE2
B
203 209Right-handed alpha
Helix 39
AE3
B
212 232Right-handed alpha
Helix 40
AE4
B
255 257Right-handed 310
Helix 41
AE5
B
294 313Right-handed alpha
Helix 42
AE6
B
317 331Right-handed alpha
Helix 43
AE7
B
343 355Right-handed alpha
Helix 44
AE8
B
376 405Right-handed alpha
Helix 45
AE9
B
416 435Right-handed alpha
Helix 46
AF1
B
444 452Right-handed alpha
Helix 47
AF2
B
456 470Right-handed alpha
Helix 48
AF3
B
472 477Right-handed alpha
Helix 49
AF4
B
480 496Right-handed alpha
Helix 50
AF5
B
497 502Right-handed 310
Helix 51
AF6
B
506 523Right-handed alpha
Helix 52
AF7
B
525 541Right-handed alpha
Helix 53
AF8
B
541 554Right-handed alpha
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There are 8 sheets in PDB entry 8IRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
439 441anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
248 251anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
259 266anti-parallel
Strand 3
B
259 266anti-parallel
Strand 4
B
274 275anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
259 266anti-parallel
Strand 3
B
259 266anti-parallel
Strand 4
B
286 287anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
104 105anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
439 441anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
250 251anti-parallel
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