Analysis of interatomic Contacts of Structural Units in PDB entry:
8ISJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ISJ entry

There are 2 chains in PDB entry 8ISJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 73	ALA 1120
B	HIS 73	ALA 1119

There are 53 helices in PDB entry 8ISJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	77	Right-handed 310
Helix 2	AA2	A	100	107	Right-handed alpha
Helix 3	AA3	A	128	133	Right-handed 310
Helix 4	AA4	A	134	147	Right-handed alpha
Helix 5	AA5	A	149	154	Right-handed 310
Helix 6	AA6	A	199	203	Right-handed 310
Helix 7	AA7	A	204	213	Right-handed alpha
Helix 8	AA8	A	218	235	Right-handed alpha
Helix 9	AA9	A	270	274	Right-handed 310
Helix 10	AB1	A	275	282	Right-handed alpha
Helix 11	AB2	A	321	331	Right-handed alpha
Helix 12	AB3	A	382	398	Right-handed alpha
Helix 13	AB4	A	404	425	Right-handed alpha
Helix 14	AB5	A	430	435	Right-handed alpha
Helix 15	AB6	A	438	442	Right-handed 310
Helix 16	AB7	A	464	479	Right-handed alpha
Helix 17	AB8	A	489	494	Right-handed alpha
Helix 18	AB9	A	497	502	Right-handed alpha
Helix 19	AC1	A	569	589	Right-handed alpha
Helix 20	AC2	A	779	787	Right-handed alpha
Helix 21	AC3	A	789	793	Right-handed 310
Helix 22	AC4	A	814	832	Right-handed alpha
Helix 23	AC5	A	876	924	Right-handed alpha
Helix 24	AC6	A	927	950	Right-handed alpha
Helix 25	AC7	A	952	959	Right-handed alpha
Helix 26	AC8	A	970	980	Right-handed alpha
Helix 27	AC9	A	981	988	Right-handed alpha
Helix 28	AD1	A	997	1003	Right-handed alpha
Helix 29	AD2	A	1008	1026	Right-handed alpha
Helix 30	AD3	A	1065	1074	Right-handed alpha
Helix 31	AD4	A	1079	1096	Right-handed alpha
Helix 32	AD5	B	102	108	Right-handed alpha
Helix 33	AD6	B	134	147	Right-handed alpha
Helix 34	AD7	B	196	202	Right-handed alpha
Helix 35	AD8	B	204	214	Right-handed alpha
Helix 36	AD9	B	218	235	Right-handed alpha
Helix 37	AE1	B	275	282	Right-handed alpha
Helix 38	AE2	B	321	331	Right-handed alpha
Helix 39	AE3	B	380	425	Right-handed alpha
Helix 40	AE4	B	430	435	Right-handed alpha
Helix 41	AE5	B	464	479	Right-handed alpha
Helix 42	AE6	B	569	588	Right-handed alpha
Helix 43	AE7	B	779	787	Right-handed alpha
Helix 44	AE8	B	814	831	Right-handed alpha
Helix 45	AE9	B	876	891	Right-handed alpha
Helix 46	AF1	B	894	924	Right-handed alpha
Helix 47	AF2	B	927	949	Right-handed alpha
Helix 48	AF3	B	953	958	Right-handed alpha
Helix 49	AF4	B	970	988	Right-handed alpha
Helix 50	AF5	B	997	1002	Right-handed alpha
Helix 51	AF6	B	1008	1026	Right-handed alpha
Helix 52	AF7	B	1065	1073	Right-handed alpha
Helix 53	AF8	B	1080	1096	Right-handed alpha

There are 19 sheets in PDB entry 8ISJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	298	299	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	85	90	anti-parallel
Strand 3	A	177	184	anti-parallel
Strand 4	A	166	174	anti-parallel
Strand 5	A	156	159	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	238	240	anti-parallel
Strand 3	A	362	373	anti-parallel
Strand 4	A	335	345	anti-parallel
Strand 5	A	287	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	250	251	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	458	first strand
Strand 2	A	447	452	anti-parallel
Strand 3	A	518	523	anti-parallel
Strand 4	A	507	512	anti-parallel
Strand 5	A	484	487	anti-parallel
Strand 6	A	746	748	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	559	560	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	778	first strand
Strand 2	A	766	769	anti-parallel
Strand 3	A	868	873	anti-parallel
Strand 4	A	848	857	anti-parallel
Strand 5	A	835	842	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	804	first strand
Strand 2	A	810	811	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	966	969	first strand
Strand 2	A	1004	1007	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	994	first strand
Strand 2	A	1032	1040	parallel
Strand 3	A	1051	1060	anti-parallel
Strand 4	A	1108	1117	anti-parallel
Strand 5	A	1100	1105	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	298	301	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	85	89	anti-parallel
Strand 5	B	177	184	anti-parallel
Strand 6	B	166	174	anti-parallel
Strand 7	B	158	159	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	364	373	anti-parallel
Strand 5	B	335	343	anti-parallel
Strand 6	B	287	290	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	447	452	anti-parallel
Strand 3	B	518	523	anti-parallel
Strand 4	B	507	512	anti-parallel
Strand 5	B	484	485	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	559	560	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	747	first strand
Strand 2	B	755	757	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	778	first strand
Strand 2	B	766	769	anti-parallel
Strand 3	B	865	873	anti-parallel
Strand 4	B	848	859	anti-parallel
Strand 5	B	835	842	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	804	first strand
Strand 2	B	810	811	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	966	969	first strand
Strand 2	B	1004	1007	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	991	994	first strand
Strand 2	B	1032	1040	parallel
Strand 3	B	1051	1060	anti-parallel
Strand 4	B	1108	1117	anti-parallel
Strand 5	B	1100	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ISJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ISJ