Analysis of interatomic Contacts of Structural Units in PDB entry:
8ITL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ITL entry

There are 5 chains in PDB entry 8ITL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASN 88	SER 379
A	THR 9	LEU 394
B	GLU 3	SER 343
G	THR 6	ARG 62
N	GLN 1	SER 127

There are 25 helices in PDB entry 8ITL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	88	126	Right-handed alpha
Helix 2	AA2	R	131	158	Right-handed alpha
Helix 3	AA3	R	175	211	Right-handed alpha
Helix 4	AA4	R	219	245	Right-handed alpha
Helix 5	AA5	R	256	293	Right-handed alpha
Helix 6	AA6	R	295	321	Right-handed alpha
Helix 7	AA7	R	332	356	Right-handed alpha
Helix 8	AA8	R	360	379	Right-handed alpha
Helix 9	AA9	A	10	40	Right-handed alpha
Helix 10	AB1	A	52	60	Right-handed alpha
Helix 11	AB2	A	234	239	Right-handed 310
Helix 12	AB3	A	264	279	Right-handed alpha
Helix 13	AB4	A	281	285	Right-handed 310
Helix 14	AB5	A	293	303	Right-handed alpha
Helix 15	AB6	A	307	312	Right-handed alpha
Helix 16	AB7	A	313	316	Right-handed 310
Helix 17	AB8	A	331	352	Right-handed alpha
Helix 18	AB9	A	370	391	Right-handed alpha
Helix 19	AC1	B	4	26	Right-handed alpha
Helix 20	AC2	B	29	34	Right-handed alpha
Helix 21	AC3	B	35	37	Right-handed 310
Helix 22	AC4	G	7	24	Right-handed alpha
Helix 23	AC5	G	29	44	Right-handed alpha
Helix 24	AC6	N	28	32	Right-handed 310
Helix 25	AC7	N	87	91	Right-handed 310

There are 11 sheets in PDB entry 8ITL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	42	47	parallel
Strand 3	A	243	249	parallel
Strand 4	A	286	292	parallel
Strand 5	A	359	362	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	319	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	158	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	259	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	17	24	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	96	anti-parallel
Strand 4	N	36	39	anti-parallel
Strand 5	N	45	47	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ITL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ITL