Analysis of interatomic Contacts of Structural Units in PDB entry:
8IUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IUD entry

There is 1 chain in PDB entry 8IUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8IUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
28 38Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
73 81Right-handed alpha
Helix 5
AA5
A
81 91Right-handed alpha
Helix 6
AA6
A
109 121Right-handed alpha
Helix 7
AA7
A
132 145Right-handed alpha
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
168 182Right-handed alpha
Helix 11
AB2
A
204 214Right-handed alpha
Helix 12
AB3
A
223 228Right-handed 310
Helix 13
AB4
A
229 238Right-handed alpha
Helix 14
AB5
A
239 247Right-handed 310
Helix 15
AB6
A
264 274Right-handed alpha
Helix 16
AB7
A
291 303Right-handed alpha
Helix 17
AB8
A
323 336Right-handed alpha
Helix 18
AB9
A
340 347Right-handed alpha
Helix 19
AC1
A
353 365Right-handed alpha
Helix 20
AC2
A
366 369Right-handed 310
Helix 21
AC3
A
373 388Right-handed alpha
Helix 22
AC4
A
393 405Right-handed alpha
Helix 23
AC5
A
409 414Right-handed 310
Helix 24
AC6
A
425 429Right-handed alpha
Helix 25
AC7
A
441 443Right-handed 310
Helix 26
AC8
A
444 448Right-handed 310
Helix 27
AC9
A
450 459Right-handed alpha
Helix 28
AD1
A
471 486Right-handed alpha
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There are 4 sheets in PDB entry 8IUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
43 48parallel
Strand 3
A
156 161parallel
Strand 4
A
185 190parallel
Strand 5
A
13 16parallel
Strand 6
A
218 221parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
122 123parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
125 126parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
420 424parallel
Strand 3
A
285 289parallel
Strand 4
A
433 439parallel
Strand 5
A
461 469parallel
Strand 6
A
256 260parallel
Strand 7
A
492 494parallel
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