Analysis of interatomic Contacts of Structural Units in PDB entry:
8IUG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IUG entry

There are 37 chains in PDB entry 8IUG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	GLN 6	ARG 55
1	ARG 4	ALA 41
2	GLN 6	ARG 55
3	ASP 3	ALA 41
4	GLN 6	ARG 55
5	ASP 3	ALA 41
6	GLN 6	ARG 55
7	ASP 3	ALA 41
8	GLN 6	ARG 55
9	ARG 4	ALA 41
A	ARG 4	ALA 41
B	GLN 6	ARG 55
C	PRO 5	PRO 320
D	ASP 3	ALA 41
E	GLN 6	ARG 55
F	ARG 4	ALA 41
G	GLN 6	ARG 55
H	ASP 3	ALA 41
I	GLN 6	ARG 55
J	ASP 3	ALA 41
K	GLN 6	ARG 55
L	SER 30	ALA 315
M	PRO 335	PHE 640
N	ASP 3	ALA 41
O	GLN 6	ARG 55
P	ASP 3	ALA 41
Q	GLN 6	ARG 55
R	ASP 3	ALA 41
S	GLN 6	ARG 55
T	ARG 4	ALA 41
U	GLN 6	ARG 55
V	ARG 4	ALA 41
W	GLN 6	ARG 55
X	MET 1	GLU 30
Y	MET 1	PRO 32
Z	ALA 3	ALA 12
h	SER 12	ASN 58

There are 92 helices in PDB entry 8IUG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	11	15	Right-handed 310
Helix 2	AA2	0	19	51	Right-handed alpha
Helix 3	AA3	1	6	32	Right-handed alpha
Helix 4	AA4	2	19	51	Right-handed alpha
Helix 5	AA5	3	7	34	Right-handed alpha
Helix 6	AA6	4	11	15	Right-handed 310
Helix 7	AA7	4	19	51	Right-handed alpha
Helix 8	AA8	5	7	34	Right-handed alpha
Helix 9	AA9	6	19	51	Right-handed alpha
Helix 10	AB1	7	7	34	Right-handed alpha
Helix 11	AB2	8	11	15	Right-handed 310
Helix 12	AB3	8	19	51	Right-handed alpha
Helix 13	AB4	9	7	34	Right-handed alpha
Helix 14	AB5	A	7	34	Right-handed alpha
Helix 15	AB6	B	19	51	Right-handed alpha
Helix 16	AB7	C	9	14	Right-handed alpha
Helix 17	AB8	C	15	47	Right-handed alpha
Helix 18	AB9	C	71	85	Right-handed alpha
Helix 19	AC1	C	98	109	Right-handed alpha
Helix 20	AC2	C	117	121	Right-handed 310
Helix 21	AC3	C	135	156	Right-handed alpha
Helix 22	AC4	C	186	190	Right-handed 310
Helix 23	AC5	C	218	235	Right-handed alpha
Helix 24	AC6	C	239	243	Right-handed 310
Helix 25	AC7	C	254	274	Right-handed alpha
Helix 26	AC8	C	276	284	Right-handed 310
Helix 27	AC9	C	292	297	Right-handed alpha
Helix 28	AD1	C	313	317	Right-handed 310
Helix 29	AD2	D	7	32	Right-handed alpha
Helix 30	AD3	E	19	51	Right-handed alpha
Helix 31	AD4	F	7	34	Right-handed alpha
Helix 32	AD5	G	11	15	Right-handed 310
Helix 33	AD6	G	19	51	Right-handed alpha
Helix 34	AD7	H	7	32	Right-handed alpha
Helix 35	AD8	I	19	51	Right-handed alpha
Helix 36	AD9	J	7	32	Right-handed alpha
Helix 37	AE1	K	19	51	Right-handed alpha
Helix 38	AE2	L	36	43	Right-handed alpha
Helix 39	AE3	L	49	55	Right-handed alpha
Helix 40	AE4	L	73	93	Right-handed alpha
Helix 41	AE5	L	99	103	Right-handed 310
Helix 42	AE6	L	109	113	Right-handed 310
Helix 43	AE7	L	122	150	Right-handed alpha
Helix 44	AE8	L	154	172	Right-handed alpha
Helix 45	AE9	L	172	179	Right-handed alpha
Helix 46	AF1	L	180	184	Right-handed 310
Helix 47	AF2	L	191	203	Right-handed alpha
Helix 48	AF3	L	205	208	Right-handed 310
Helix 49	AF4	L	209	235	Right-handed alpha
Helix 50	AF5	L	244	255	Right-handed alpha
Helix 51	AF6	L	260	287	Right-handed alpha
Helix 52	AF7	L	294	302	Right-handed 310
Helix 53	AF8	M	337	343	Right-handed alpha
Helix 54	AF9	M	358	365	Right-handed alpha
Helix 55	AG1	M	379	402	Right-handed alpha
Helix 56	AG2	M	404	411	Right-handed alpha
Helix 57	AG3	M	412	415	Right-handed 310
Helix 58	AG4	M	431	434	Right-handed 310
Helix 59	AG5	M	435	463	Right-handed alpha
Helix 60	AG6	M	468	485	Right-handed alpha
Helix 61	AG7	M	485	492	Right-handed alpha
Helix 62	AG8	M	493	497	Right-handed 310
Helix 63	AG9	M	503	516	Right-handed alpha
Helix 64	AH1	M	518	521	Right-handed 310
Helix 65	AH2	M	522	549	Right-handed alpha
Helix 66	AH3	M	550	553	Right-handed 310
Helix 67	AH4	M	565	580	Right-handed alpha
Helix 68	AH5	M	586	613	Right-handed alpha
Helix 69	AH6	M	616	624	Right-handed alpha
Helix 70	AH7	M	634	639	Right-handed 310
Helix 71	AH8	N	7	34	Right-handed alpha
Helix 72	AH9	O	11	15	Right-handed 310
Helix 73	AI1	O	19	51	Right-handed alpha
Helix 74	AI2	P	7	34	Right-handed alpha
Helix 75	AI3	Q	11	15	Right-handed 310
Helix 76	AI4	Q	19	51	Right-handed alpha
Helix 77	AI5	R	7	34	Right-handed alpha
Helix 78	AI6	S	11	15	Right-handed 310
Helix 79	AI7	S	19	51	Right-handed alpha
Helix 80	AI8	T	7	34	Right-handed alpha
Helix 81	AI9	U	14	18	Right-handed 310
Helix 82	AJ1	U	19	51	Right-handed alpha
Helix 83	AJ2	V	7	32	Right-handed alpha
Helix 84	AJ3	V	36	40	Right-handed 310
Helix 85	AJ4	W	11	15	Right-handed 310
Helix 86	AJ5	W	19	51	Right-handed alpha
Helix 87	AJ6	X	2	25	Right-handed alpha
Helix 88	AJ7	Y	4	16	Right-handed alpha
Helix 89	AJ8	Y	17	31	Right-handed alpha
Helix 90	AJ9	h	16	23	Right-handed alpha
Helix 91	AK1	h	23	46	Right-handed alpha
Helix 92	AK2	h	53	58	Right-handed alpha

There are 4 sheets in PDB entry 8IUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	34	first strand
Strand 2	h	49	52	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	64	first strand
Strand 2	L	67	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	350	351	first strand
Strand 2	M	373	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	356	357	first strand
Strand 2	M	369	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IUG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IUG