Analysis of interatomic Contacts of Structural Units in PDB entry:
8IUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IUO entry

There are 6 chains in PDB entry 8IUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1VAL 362
A
 MET 1VAL 362
F
 U 1001 U 1035
B
 MET 1VAL 362
D
 MET 1VAL 362
E
 MET 1VAL 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 8IUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 6Right-handed 310
Helix 2
AA2
C
9 20Right-handed alpha
Helix 3
AA3
C
37 39Right-handed 310
Helix 4
AA4
C
40 54Right-handed alpha
Helix 5
AA5
C
61 75Right-handed alpha
Helix 6
AA6
C
75 87Right-handed alpha
Helix 7
AA7
C
120 140Right-handed alpha
Helix 8
AA8
C
146 150Right-handed 310
Helix 9
AA9
C
155 171Right-handed alpha
Helix 10
AB1
C
178 189Right-handed alpha
Helix 11
AB2
C
190 197Right-handed alpha
Helix 12
AB3
C
201 216Right-handed alpha
Helix 13
AB4
C
217 233Right-handed alpha
Helix 14
AB5
C
237 250Right-handed alpha
Helix 15
AB6
C
255 268Right-handed alpha
Helix 16
AB7
C
269 273Right-handed 310
Helix 17
AB8
C
274 279Right-handed alpha
Helix 18
AB9
C
280 295Right-handed alpha
Helix 19
AC1
C
306 312Right-handed 310
Helix 20
AC2
C
313 316Right-handed 310
Helix 21
AC3
C
317 331Right-handed alpha
Helix 22
AC4
C
343 360Right-handed alpha
Helix 23
AC5
A
1 6Right-handed 310
Helix 24
AC6
A
9 20Right-handed alpha
Helix 25
AC7
A
37 39Right-handed 310
Helix 26
AC8
A
40 54Right-handed alpha
Helix 27
AC9
A
61 75Right-handed alpha
Helix 28
AD1
A
75 87Right-handed alpha
Helix 29
AD2
A
120 140Right-handed alpha
Helix 30
AD3
A
146 150Right-handed 310
Helix 31
AD4
A
155 171Right-handed alpha
Helix 32
AD5
A
178 189Right-handed alpha
Helix 33
AD6
A
190 197Right-handed alpha
Helix 34
AD7
A
201 216Right-handed alpha
Helix 35
AD8
A
217 233Right-handed alpha
Helix 36
AD9
A
237 250Right-handed alpha
Helix 37
AE1
A
255 268Right-handed alpha
Helix 38
AE2
A
269 273Right-handed 310
Helix 39
AE3
A
274 279Right-handed alpha
Helix 40
AE4
A
280 295Right-handed alpha
Helix 41
AE5
A
306 312Right-handed 310
Helix 42
AE6
A
313 316Right-handed 310
Helix 43
AE7
A
317 331Right-handed alpha
Helix 44
AE8
A
343 360Right-handed alpha
Helix 45
AE9
B
1 6Right-handed 310
Helix 46
AF1
B
9 20Right-handed alpha
Helix 47
AF2
B
37 39Right-handed 310
Helix 48
AF3
B
40 54Right-handed alpha
Helix 49
AF4
B
61 75Right-handed alpha
Helix 50
AF5
B
75 87Right-handed alpha
Helix 51
AF6
B
120 140Right-handed alpha
Helix 52
AF7
B
146 150Right-handed 310
Helix 53
AF8
B
155 171Right-handed alpha
Helix 54
AF9
B
178 189Right-handed alpha
Helix 55
AG1
B
190 197Right-handed alpha
Helix 56
AG2
B
201 216Right-handed alpha
Helix 57
AG3
B
217 233Right-handed alpha
Helix 58
AG4
B
237 250Right-handed alpha
Helix 59
AG5
B
255 268Right-handed alpha
Helix 60
AG6
B
269 273Right-handed 310
Helix 61
AG7
B
274 279Right-handed alpha
Helix 62
AG8
B
280 295Right-handed alpha
Helix 63
AG9
B
306 312Right-handed 310
Helix 64
AH1
B
313 316Right-handed 310
Helix 65
AH2
B
317 331Right-handed alpha
Helix 66
AH3
B
343 360Right-handed alpha
Helix 67
AH4
D
1 6Right-handed 310
Helix 68
AH5
D
9 20Right-handed alpha
Helix 69
AH6
D
37 39Right-handed 310
Helix 70
AH7
D
40 54Right-handed alpha
Helix 71
AH8
D
61 75Right-handed alpha
Helix 72
AH9
D
75 87Right-handed alpha
Helix 73
AI1
D
120 140Right-handed alpha
Helix 74
AI2
D
146 150Right-handed 310
Helix 75
AI3
D
155 171Right-handed alpha
Helix 76
AI4
D
178 189Right-handed alpha
Helix 77
AI5
D
190 197Right-handed alpha
Helix 78
AI6
D
201 216Right-handed alpha
Helix 79
AI7
D
217 233Right-handed alpha
Helix 80
AI8
D
237 250Right-handed alpha
Helix 81
AI9
D
255 268Right-handed alpha
Helix 82
AJ1
D
269 273Right-handed 310
Helix 83
AJ2
D
274 279Right-handed alpha
Helix 84
AJ3
D
280 295Right-handed alpha
Helix 85
AJ4
D
306 312Right-handed 310
Helix 86
AJ5
D
313 316Right-handed 310
Helix 87
AJ6
D
317 331Right-handed alpha
Helix 88
AJ7
D
343 360Right-handed alpha
Helix 89
AJ8
E
1 6Right-handed 310
Helix 90
AJ9
E
9 20Right-handed alpha
Helix 91
AK1
E
37 39Right-handed 310
Helix 92
AK2
E
40 54Right-handed alpha
Helix 93
AK3
E
61 75Right-handed alpha
Helix 94
AK4
E
75 87Right-handed alpha
Helix 95
AK5
E
120 140Right-handed alpha
Helix 96
AK6
E
146 150Right-handed 310
Helix 97
AK7
E
155 171Right-handed alpha
Helix 98
AK8
E
178 189Right-handed alpha
Helix 99
AK9
E
190 197Right-handed alpha
Helix 100
AL1
E
201 216Right-handed alpha
Helix 101
AL2
E
217 233Right-handed alpha
Helix 102
AL3
E
237 250Right-handed alpha
Helix 103
AL4
E
255 268Right-handed alpha
Helix 104
AL5
E
269 273Right-handed 310
Helix 105
AL6
E
274 279Right-handed alpha
Helix 106
AL7
E
280 295Right-handed alpha
Helix 107
AL8
E
306 312Right-handed 310
Helix 108
AL9
E
313 316Right-handed 310
Helix 109
AM1
E
317 331Right-handed alpha
Helix 110
AM2
E
343 360Right-handed alpha
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There are 10 sheets in PDB entry 8IUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
93 94parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 104first strand
Strand 2
C
107 115anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
93 94parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 104first strand
Strand 2
A
107 115anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
93 94parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 104first strand
Strand 2
B
107 115anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 35first strand
Strand 2
D
93 94parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 104first strand
Strand 2
D
107 115anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 35first strand
Strand 2
E
93 94parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 104first strand
Strand 2
E
107 115anti-parallel
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