Analysis of interatomic Contacts of Structural Units in PDB entry:
8IVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8IVP entry

There are 8 chains in PDB entry 8IVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 17	ILE 194
A	ASN 196	TYR 337
B	GLY 16	ILE 194
B	ASN 196	TYR 337
C	ARG 19	ILE 194
C	ASN 196	TYR 337
D	ILE 18	ILE 194
D	ASN 196	TYR 337

There are 37 helices in PDB entry 8IVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	69	Right-handed alpha
Helix 2	AA2	A	86	101	Right-handed alpha
Helix 3	AA3	A	108	124	Right-handed alpha
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	166	173	Right-handed alpha
Helix 6	AA6	A	199	212	Right-handed alpha
Helix 7	AA7	A	252	265	Right-handed alpha
Helix 8	AA8	A	275	281	Right-handed alpha
Helix 9	AA9	A	311	325	Right-handed alpha
Helix 10	AB1	B	64	69	Right-handed alpha
Helix 11	AB2	B	86	101	Right-handed alpha
Helix 12	AB3	B	108	124	Right-handed alpha
Helix 13	AB4	B	146	150	Right-handed 310
Helix 14	AB5	B	166	173	Right-handed alpha
Helix 15	AB6	B	199	212	Right-handed alpha
Helix 16	AB7	B	252	265	Right-handed alpha
Helix 17	AB8	B	275	281	Right-handed alpha
Helix 18	AB9	B	311	324	Right-handed alpha
Helix 19	AC1	B	325	327	Right-handed 310
Helix 20	AC2	C	64	69	Right-handed alpha
Helix 21	AC3	C	86	101	Right-handed alpha
Helix 22	AC4	C	108	124	Right-handed alpha
Helix 23	AC5	C	146	150	Right-handed 310
Helix 24	AC6	C	166	173	Right-handed alpha
Helix 25	AC7	C	199	212	Right-handed alpha
Helix 26	AC8	C	252	265	Right-handed alpha
Helix 27	AC9	C	275	281	Right-handed alpha
Helix 28	AD1	C	311	325	Right-handed alpha
Helix 29	AD2	D	64	69	Right-handed alpha
Helix 30	AD3	D	86	101	Right-handed alpha
Helix 31	AD4	D	108	124	Right-handed alpha
Helix 32	AD5	D	146	150	Right-handed 310
Helix 33	AD6	D	166	173	Right-handed alpha
Helix 34	AD7	D	199	212	Right-handed alpha
Helix 35	AD8	D	252	265	Right-handed alpha
Helix 36	AD9	D	275	281	Right-handed alpha
Helix 37	AE1	D	311	324	Right-handed alpha

There are 14 sheets in PDB entry 8IVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	151	160	anti-parallel
Strand 4	A	128	138	anti-parallel
Strand 5	A	72	80	anti-parallel
Strand 6	A	83	85	anti-parallel
Strand 7	A	332	334	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	B	59	61	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	174	177	parallel
Strand 3	A	293	300	parallel
Strand 4	A	284	289	anti-parallel
Strand 5	A	233	238	anti-parallel
Strand 6	A	241	244	anti-parallel
Strand 7	A	269	271	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	174	177	parallel
Strand 3	A	293	300	parallel
Strand 4	A	303	304	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	151	159	anti-parallel
Strand 4	B	128	138	anti-parallel
Strand 5	B	72	80	anti-parallel
Strand 6	B	83	85	anti-parallel
Strand 7	B	332	334	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	174	177	parallel
Strand 3	B	293	300	parallel
Strand 4	B	284	289	anti-parallel
Strand 5	B	233	238	anti-parallel
Strand 6	B	241	245	anti-parallel
Strand 7	B	269	272	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	174	177	parallel
Strand 3	B	293	300	parallel
Strand 4	B	303	304	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	151	160	anti-parallel
Strand 4	C	128	138	anti-parallel
Strand 5	C	72	80	anti-parallel
Strand 6	C	83	85	anti-parallel
Strand 7	C	332	334	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	D	59	61	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	174	177	parallel
Strand 3	C	293	300	parallel
Strand 4	C	284	289	anti-parallel
Strand 5	C	233	238	anti-parallel
Strand 6	C	241	244	anti-parallel
Strand 7	C	269	271	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	174	177	parallel
Strand 3	C	293	300	parallel
Strand 4	C	303	304	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	45	48	anti-parallel
Strand 3	D	151	160	anti-parallel
Strand 4	D	128	138	anti-parallel
Strand 5	D	72	80	anti-parallel
Strand 6	D	83	85	anti-parallel
Strand 7	D	332	334	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	174	177	parallel
Strand 3	D	293	300	parallel
Strand 4	D	284	289	anti-parallel
Strand 5	D	233	238	anti-parallel
Strand 6	D	241	244	anti-parallel
Strand 7	D	269	271	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	174	177	parallel
Strand 3	D	293	300	parallel
Strand 4	D	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8IVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8IVP