Analysis of interatomic Contacts of Structural Units in PDB entry:
8IVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8IVZ entry

There are 4 chains in PDB entry 8IVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1359ASP 1653
B
 PRO 1358ARG 1652
C
 PRO 30GLN 53
D
 PRO 30GLN 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8IVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1359 1374Right-handed alpha
Helix 2
AA2
A
1374 1379Right-handed alpha
Helix 3
AA3
A
1388 1417Right-handed alpha
Helix 4
AA4
A
1418 1450Right-handed alpha
Helix 5
AA5
A
1589 1623Right-handed alpha
Helix 6
AA6
A
1626 1653Right-handed alpha
Helix 7
AA7
B
1360 1374Right-handed alpha
Helix 8
AA8
B
1374 1379Right-handed alpha
Helix 9
AA9
B
1388 1417Right-handed alpha
Helix 10
AB1
B
1418 1450Right-handed alpha
Helix 11
AB2
B
1589 1623Right-handed alpha
Helix 12
AB3
B
1626 1652Right-handed alpha
Helix 13
AB4
C
36 38Right-handed 310
Helix 14
AB5
C
43 53Right-handed alpha
Helix 15
AB6
D
36 38Right-handed 310
Helix 16
AB7
D
43 53Right-handed alpha
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There are 2 sheets in PDB entry 8IVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
40 42anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
40 42anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il